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Hi. I attemps to identify the viral entities from a group of the bacterial and archaeal genomes deposited in GTDB.
Identification of viral sequences from GTDB using Genomad exhibited lots of viral …
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Hi Team,
We are interested to use the li_hiv package for our dataset. I see that "In this example we used K03455 as the virus genome", but we want to use many other genomes. Should I download other g…
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I am working on measle disease and want to retrieve metadata from sequenced genomes via the following command :
`datasets summary virus genome taxon 11234 --as-json-lines | dataformat tsv virus-geno…
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## The need
In the case of introns (eukaryotes and some of their viruses), the estimated genomic redundancy can be highly inflated, wrongly indicating that the quality is bad.
## The solution
…
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Hello again!
Hope you are well.
We are getting this error when running virus IDs - tested on 11709 and 2697049.
Error: invalid or unsupported assembly accession:
The accession look a bi…
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Hello Developers,
Thank you for melon,
I am working on nanopore shotgun metagenomics data and i am using melon.
I want to include fungii and virus genomes as well in the analysis as currently…
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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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Hi,
I'm very much interested in using the HumGut database, but I have a few questions about the taxonomy files.
1) I wanted to include the Kraken DB for viruses and fungi to explore these other…
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Greetings,
I was testing your pipeline on the HPC center at our facility, and I keep getting errors with CheckV:
```
[2024-02-21 07:40:18] | Pre-check inputings. In processing...
[2024-02-21 07:…
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Thanks for your wonderful tools!
I have a collection of viral genomes (~6000 strain genomes, length=10000 bp per genome) and I am using vg to build a vg graph with these genomes. I have used tw…