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[Existing instructions](https://academy.wikipathways.org/stages/met-1-add-literature/) should be expanded to include details on how to use DOI, ISBN and URL as references. See https://github.com/wikip…
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Description:
After uploading a gene counts matrix and corresponding metadata file, I performed DE analysis, then created a list of up and down scored genes. For each list I performed STRING and Wikip…
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From 9/6/23 AHM: we have almost everything in Hetionet, except for WikiPathways and SIDER. Since Hetionet is no longer being maintained, we should consider bringing these sources in.
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can't download pathway archive,why? `pwpw.__version__=0.0.2`
```
└─(14:53:39)──> proxychains python -c 'import pywikipathways as pwpw;pwpw.download_pathway_archive(organism="Homo sapiens", format="g…
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the zip has WP2625_r125287 but WP2625_r128704 is on GitHub (matches classic): https://github.com/wikipathways/wikipathways-database/blob/main/pathways/WP2625/WP2625.gpml#L2C116-L2C130
egonw updated
1 month ago
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Hi,
I am trying to use clusterProfiler::enrichWP that points to this url:
"https://wikipathways-data.wmcloud.org/current/gmt/
It seems the latest update has had some issues - most of the orga…
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@ericprud, can you plz check this section: https://github.com/biohackathon-swat4hcls/2024-hack4-hack8/blame/main/paper/paper.md#L91-L113
Also, you are not listed as author on this write up yet. cc …
egonw updated
4 months ago
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Currently, the pom.xml indicates this app runs with Java 8 (https://github.com/wikipathways/cytoscape-wikipathways-app/blob/main/pom.xml#L98) ; this should be update to 11 (when PV4 is in place @mkutm…
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@marvinm2, @tabbassidaloii, @JervenBolleman, please check the draft write up of the WikiPathways VoID statistics SWAT4HCLS biohackathon session: https://github.com/biohackathon-swat4hcls/2024-hack4-ha…
egonw updated
4 months ago