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Hi,
We've been trying to simulate Zymo mock communities using your "even" pre-trained model. We've consistently found *Staphylococcus aureus* to be seemingly undersimulated, while *Cryptococcus neo…
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Added functionality where users can analyse zymo standard mocks for taxonomic assignment accuracy(?)
Ref: https://github.com/OxfordCMS/OCMS_zymoBIOMICS
Development branch: https://github.com/microsu…
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Thanks (again) for this 5KHz data set, which is being very useful in testing our POD5S/BLOW5 converter https://github.com/Psy-Fer/blue-crab,
Are these the correct zymo references that we should use …
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Hi @bdemaree,
I am really excited about this method and I hope to incorporate it into my own research. I am trying to recreate your work so I can see whether my aims are doable, but I'm having trou…
jrede updated
4 years ago
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Hello!
I've been using InSilicoSeq to generate mock communities for a project of my own to assess assembly quality (https://github.com/cimendes/LMAS).
To match the distribution of a real commun…
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I am very interested in the development of strainberry, especially as it applies to metagenomics with PacBio HiFi data. I wanted to draw your attention to a new PacBio dataset I recently uploaded to N…
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Hello,
I am running NanoPhase on the ZymoBIOMICS Microbial Community Standard sequenced with long reads only. I am having problems with medaka polishing. The first problem was an out of memory err…
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Hi,
I intended to enrich Saccharomyces cerevisiae in ZymoBIOMICS mock microbial community. Even channels are treated as the adaptive group by setting “—even” and odd channels as control. After runnin…
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Hello,
I am very interested in using your approach for binning HiFi reads. I plan to test it on some internal datasets, but wanted to make you aware of a new dataset I have made available on NCBI. Th…
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Greetings,
I've been using gatb-minima-pipeline for a while now for a de novo assembly software benchmark, available at [Github](https://github.com/cimendes/LMAS). I've been running it so far witho…