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Hi,
Is there a way to use Pavian with amplicon sequencing data (e.g. 16S or 18S)?
Best,
Sam
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Trying to execute the 16s workflow via docker. From the documentation it sounded like only `usearch` would be missing due to its licensing issues, however it seems that `vsearch` is also excluded fro…
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Until the major update of GreenGenes DB to GreenGenes2, it can be easily used as a custom 16S database for Kraken 2. This will be implemented as a simple bash script (https://github.com/DerrickWood/kr…
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problem is reformatting the taxonomy information in format needed by UTAX/SINTAX. I've previously looked at SILVA taxonomy -- the taxonomy appeared to be a hot mess (I'm not a bacteriologist).... So …
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Hi,
I have installed the Kraken database but same error is coming again and again. that taxo.k2d is missing while file can be seen after installation. But there are no folders after uncompressing/ins…
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Hi Daniel!
Thank you for the great program! I am having major issues with segmentation as the higher intensities are getting clipped. Since my images are CV_16U, they get converted to CV_16S, but t…
GxHam updated
4 years ago
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I can't decode the following message with this tool:
!3m1!5s0x479fc1a8e70d7c1b:0x92dd4312ee42f2f8!4m22!1m10!3m9!1s0x479fc1a8e70717f3:0x316fca3a5c2c03e!2sBohemian+Hotel!5m2!4m1!1i2!8m2!3d49.0186323!…
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Generating proteomic databases from 16S rRNA / taxonomy data.
TOOL IDEA:
Given that most of the metagenomics studies are based on 16S ribosomal RNA-based taxonomy identifications, a tool availabl…
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At some point we may want to make a more comprehensive list of barcoding genes and their synonyms (also for use in the sequence ID tool, etc.)
Starting here (with a bit of help from AI):
[edited…