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Hi,
I search to call CNV with RAD human data. Can Control-FREEC helps me ? For now I just try to understand how to configure the soft and do some tests.
Do I need to configure like Exome data with…
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I have a multiplex run composed of 20 different barcode libraries with all libraries having the same amplicon fragment (same 1st PCR with all the same primers). The sequencing provider sent me the dem…
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> Taxonomic assignment is the core of targeted metagenomics approaches that aims to assign sequencing reads to their corresponding taxonomy. Sequence similarity searching and machine learning (ML) are…
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Did you forget to add this preprint to the citation list?
https://www.biorxiv.org/content/10.1101/645903v3
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Hi,
is this pipeline suited for nanopore data?
kind regards,
T.
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Hi all,
I am using align_trim.py script to remove primers from the alignment. In me case, we have performed SARS2 amplification with v3 primer set, and then sequenced with illumina (Miseq).
I …
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Hello V-pipe team,
Thanks for the wonderful tool.
My v-pipe works fine, however I am getting this warning (Warning: All reads at position 4045 in the same reverse orientation ?) for number of positi…
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Can the `fastx_getseqs` be included too? Seems it has been removed compared to version 11:
`Unknown command-line option -fastx_getseqs`
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Right now, there is no way (short of digging through the database) to look back and see what settings were used to create a pool. For example, if one does "Pool library plates", picks a plate, and ma…