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nanoporetech
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pipeline-umi-amplicon
Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
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can this run with single UMI
#33
alexyfyf
opened
6 days ago
0
fixed percentage unmapped in filter_reads.py
#32
cfblaeb
closed
4 months ago
0
Update Snakefile to work with current medaka
#31
cfblaeb
opened
6 months ago
0
Update environment.yml to python 3.10.8 to enable install of medaka 3.10
#30
cfblaeb
opened
6 months ago
0
Specify numpy version prevents error #15
#29
passelma42
opened
1 year ago
3
Error creating conda environment.
#28
gilfreund
opened
1 year ago
0
sanitized the environment file
#27
cfblaeb
closed
1 year ago
1
Update README.md
#26
cfblaeb
closed
1 year ago
0
unused input
#25
cfblaeb
opened
2 years ago
0
qmask none specified twice on vsearch
#24
cfblaeb
closed
2 years ago
0
added a t
#23
cfblaeb
closed
2 years ago
0
sats -> stats
#22
cfblaeb
closed
2 years ago
0
spelling mistake in threads
#21
cfblaeb
closed
2 years ago
0
spelling error in threads
#20
cfblaeb
closed
2 years ago
0
added bedtools to dependencies
#19
cfblaeb
closed
2 years ago
0
umi_sats.py issues
#18
cfblaeb
opened
2 years ago
0
Example that will run in initial environment
#17
cfblaeb
closed
2 years ago
0
Misspelling of variants
#16
cfblaeb
closed
2 years ago
0
Specify numpy version prevents error
#15
CrispyNuggetD
closed
2 years ago
0
Customizing pipeline for cDNA-PCR runs rather than gDNA amplicons.
#14
callumparr
opened
2 years ago
0
Error in rule polish_clusters (both with the test data and with real data)
#13
scogi
closed
2 years ago
4
Error: no Snakefile found
#12
dieunelderilus
opened
2 years ago
1
the installation test of pipeline-umi-amplicon failed
#11
dieunelderilus
opened
2 years ago
11
MissingRuleException error
#10
dieunelderilus
opened
2 years ago
3
Fastq filter and variant options
#9
SemiQuant
closed
1 year ago
2
Allowing user input for UMIs and context
#8
SemiQuant
closed
3 years ago
1
Cluster loss during rule reformat_filter_clusters
#7
kathleenabadie
opened
3 years ago
1
accidental post please ignore
#6
gordonrix
closed
3 years ago
0
rule polish_clusters
#5
belgn
opened
3 years ago
1
Create output dir manually
#4
philres
closed
3 years ago
0
test if installation was successful
#3
bhill-17
closed
3 years ago
1
conda create issues
#2
bhill-17
closed
3 years ago
4
Missing citation?
#1
Kirk3gaard
opened
3 years ago
1