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Hi,
Im trying to install bactopia on an ubuntu server 22.04 but i have these following error,
(bactopia) jmg@arslserver:~/bactopia$ bactopia datasets
2023-10-02 15:09:02:root:INFO - Setting up …
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**Description**
Using an M1 Pro MacBook, I encountered this error while using Bactopia to run the tutorial from the Sequence Read Archive (SRA). The result indicated that the ARIBA dependency was not…
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+[Term]
+id: GO:0141177
+name: symbiont-mediated evasion of recognition by host innate immune effector
+namespace: biological_process
+def: "A process by which a symbiont mitigates the effects of …
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Dear all,
Congratulations on the development of this pipeline, I have had great results.
Would it be possible to download an assembly to enter at the end of the pipeline and perform Antimicrobial Re…
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Hello
I have been trying to run the bactopia pipeline from the singularity (supported in my cluster) container pulled from `quay.io`.
I managed to download the datasets, which worked onl…
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Summary of request: Add a new organization to ROR
Update record:
Name of organization:
ROR ID:
Which part of the record needs to be changed?
Description of change:
Merge/split/deprecate …
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### Description of the bug
When I run the nf-core/funcscan pipeline with test,singularity as -profile, Amrfinderplus_update does not work properly and the pipeline crashes.
I could run nf-core/mag…
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## The need
HMMs are leveraged widely in anvio to identify genes for various metrics. Enabling easier access to custom HMM would allow people to more easily ask their own questions about what a bac…
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**It’s decision time on the next set of targets.**
Alice just mailed [the latest set of analogs she has shepherded through (OSM-S-291 to OSM-S-301)](http://malaria.ourexperiment.org/biological_data/1…
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I'm trying to install nextflow but when I execute the comand "nextflow run main_AMR++.nf -profile conda" , this happens:
ERROR ~ Error executing process > 'FAST_AMRplusplus:FASTQ_QC_WF:multiqc (Ru…