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Hi, I would like to be able to bgzip according to a bgzip index file.
The issue I have is that different implementations of bgzip segregate the uncompressed data into blocks in different ways. For in…
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Hi,
I work with mouse genome (mm10) and i don't find any phastCons100way.UCSC.hg19 equivalent for mm10 to do the "Split reads" part of bioconductor tutorial.
Sorry for my bad english.
Thank…
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I noticed that gene is still making requests to `ws://null/`. This is an artifact of the old backend API which used websockets. We need to remove that code, as well as a bunch of other things involved…
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Hi, CellSNP-lite works well for most of my data except this bam file where it throws the following error. Please let me know what is causing this error and how to resolve it. I have posted the last fe…
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### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
Yes,…
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```
What steps will reproduce the problem?
1. make
2.
3.
What is the expected output? What do you see instead?
g++ -DMAXHITS=100 -DTHREAD -funroll-loops -Lsamtools -Isamtools -O3
-DREAD_144 -c al…
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Dear Fragmentstein team,
Thanks for the useful tool! I feel like a lot of people could really use your tool, hopefully FinaleDB could have a link to your tool for more recognition.
However, I have…
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Hello all,
I tried to run the example but it was failed (problem is attached).
Would you please advise me on how to proceed ?
Amir
```
amir@amir-VirtualBox:~/FAST-iCLIP$ fasticlip -i '/home/…
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Hi, dear Derek:
I am using bamtools utility programs to merge multiple files and then sort them by coordinates. I can do it in two separated steps without any problem. However, if I put them in one …
fyfy updated
12 years ago
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a few thoughts on unnecessary duplication of files and/or other space-saving ideas --
* `{catlas_base}/bcalm.{catlas_base}.k{ksize}.unitigs.fa` can be designated as `temporary`- it's only used once…