iobio gene.iobio issues

iobio / gene.iobio

Gene.iobio vue

MIT License

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issues

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When gene is launched from Mosaic, warn user when required files not present

#1080 tonydisera opened 2 weeks ago
0
Add UDNI Mosaic instance

#1079 tonydisera closed 3 weeks ago
0
UDNI Mosaic

#1078 tonydisera closed 3 weeks ago
0
Udni mosaic

#1077 tonydisera closed 3 weeks ago
0
Bypassing unknown genes stops analysis?

#1076 AlistairNWard opened 3 weeks ago
1
Ensure ClinVar is filtering out significance terms

#1075 AlistairNWard opened 3 weeks ago
2
Order gene list on similarity to entered term (not alphabetically)

#1074 AlistairNWard opened 3 weeks ago
2
Add UDNI Mosaic instance to list

#1073 anderspitman closed 3 weeks ago
0
Variant interpretation and notes lost when switching from gencode<->refseq

#1072 tonydisera opened 1 month ago
0
When a new gene is added from search or gene list on nav bar, show genes tab and select the gene

#1071 tonydisera opened 2 months ago
0
If gene.iobio is launched from Mosaic w/o a gene specified, the left side panel should open, once a gene has been entered.

#1070 tonydisera opened 2 months ago
0
Unhandled exceptions due to incorrect name in error handling

#1069 anderspitman opened 2 months ago
1
Dev

#1068 tonydisera closed 2 months ago
0
Gene 4.10

#1067 tonydisera closed 2 months ago
0
Memory leaks in vue_pileup component

#1066 tonydisera opened 2 months ago
0
Typeahead gene list is consuming huge amount of heap (allGenes, allKnownGenes)

#1065 tonydisera opened 2 months ago
1
When app launched from Mosaic, check for file conflicts when launching apps (e.g. multiple bam files exist) when experiment_id not provided

#1064 tonydisera opened 2 months ago
0
When app is launched from Mosaic, alert user with error if required file (vcf/tbi) are not found for given sample(s)

#1063 tonydisera opened 2 months ago
0
Use d3 forcelayout for variant pileup

#1062 tonydisera opened 2 months ago
0
Refresh clinvar

#1061 tonydisera opened 2 months ago
0
Annotate variants with Include gnomad V4, AlphaMissense, etc

#1060 tonydisera opened 2 months ago
0
Annotate with gnomAD v4, AlphaMisense

#1059 tonydisera opened 2 months ago
1
When annotateVariants2 fails, user should be notified with alert

#1058 tonydisera opened 2 months ago
0
Look into replacing xhr-stream-dl with a native fetch implementation

#1057 anderspitman opened 3 months ago
0
In the gene typeahead, de-emphasize the gene synonyms to de-clutter the interface.

#1056 tonydisera opened 3 months ago
0
Unable to load gene.iobio.io tool

#1055 LimGal opened 3 months ago
7
When genes are copy/pasted first, the left gene panel is blank and user isn't prompted to enter data files to proceed.

#1054 tonydisera opened 3 months ago
0
Remove variant categories in left menu

#1053 AlistairNWard opened 3 months ago
1
Variant filter has a bug

#1052 AlistairNWard closed 3 months ago
1
Gene 4.9

#1051 tonydisera closed 4 months ago
0
Gene 4.9

#1050 tonydisera closed 4 months ago
0
Gene 4.9

#1049 tonydisera closed 4 months ago
0
Unclear that genes aren't recognised

#1048 AlistairNWard closed 4 months ago
0
Error if genes added with ClinVar panel open

#1047 AlistairNWard closed 4 months ago
1
The cache is not getting cleared out and these old cache items are possibly getting saved in the analysis payload.

#1046 tonydisera opened 4 months ago
0
Simplify code that specified the URL for the iobio gru backend for gene.iobio launched from Mosaic

#1045 tonydisera opened 4 months ago
1
Zoom and then click on variant messes up pileup in variants card

#1044 tonydisera closed 3 months ago
0
In Variant inspect card, show HGVS names directly rather than requiring user to click on menu button.

#1043 tonydisera closed 3 months ago
0
When gene source changes automatically (gencode to refseq), the label in the transcripts card doesn't reflect the gene source.

#1042 tonydisera closed 3 months ago
0
Fixed selectAll apply immediately

#1041 YangQi007 opened 7 months ago
0
Select all applies immediately

#1040 AlistairNWard opened 7 months ago
0
Exons are incorrectly numbered - UTRs should not be treated as separate exon

#1039 tonydisera opened 7 months ago
0
Simplified the code#1026

#1038 YangQi007 opened 7 months ago
0
Fixed the mosaic annots not updated#1036

#1037 YangQi007 closed 7 months ago
0
The mosaic annotations are not updated to reflect the annotations of the selected variant

#1036 tonydisera opened 8 months ago
2
Mosaic annotations are not showing in Select Annotations dialog when clin.iobio launched from Mosaic

#1035 tonydisera closed 7 months ago
0
Fixed cancel button behavior#1027

#1034 YangQi007 closed 8 months ago
0
Fixed the order of showing annots case sensitive and alphabetically#1025

#1033 YangQi007 closed 8 months ago
0
Fixed the buttons not showing in clin.iobio#1031

#1032 YangQi007 closed 8 months ago
0
Buttons don't show in Select Annotations dialog when running clin.iobio.io

#1031 tonydisera opened 8 months ago
0