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Hello! I'm trying to use rnaQUAST on my data. When I run rnaquast --test it works perfectly:
Finished: 2023-11-21 21:32:02
Elapsed time: 0:03:24.335269
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: …
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Hi, the easyconfig for BUSCO 4.0.5 brings in BLAST+ 2.9.0. When this version of BUSCO is used it emits the warning seen below:
```
Hostname is [...]
16-Feb-21 19:52:12
Running /tmp/slurmd/job1…
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Hi,
I ran EVM on 3 different gff files (resulting from braker, genomethreader and stringtie).
For evaluating annotations , I ran a BUSCO analysis on the merging fasta files deriving from the pre…
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**Question or Expected behavior**
Genome assembly of the autotetraploid plant
Hi, I have recently assembled a genome using nanopore reads, but the results are not good. It may result from its autot…
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Hi, @swacisko
I tried to assemble a short-read genome of _Eleocharis vivipara_.
I was expecting to get accurate assembled genome data, but I couldn't get ideal data this time.
In detail,
1) the B…
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Using a masked genome and getting a few of these warning messages from Augustus when being used from within BUSCO
```
WARNING: The following job was killed as it was taking too long (>1hr) to comp…
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Hi, Dr. Deng
I run purge_dups with scripts as below:
#!/bin/bash
####purge_dups for delete redundans ---last run 2021/02/02
asm=/home/***/Purg_ctf5K_nxpl_out/genome.nextpolish.fasta
reads=/home/…
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When running transpi with the singularity profile using the transpi repo version pulled on the 27th December 2021:
```
nextflow run ../TransPi/TransPi.nf --all --reads '/nesi/nobackup/uoo00105/ortho…
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Hi,
We have tried helixer on the Cupressus sempervirens genome assembly
https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_028749045.1/
but obtained poor busco results on the 38652 called transcrip…
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Hi,
I want to extract a GFF file for subsequent analysis. I have used GTF files from Zoonomia before, but I found that the BUSCO score of the PEP extracted from this GTF file was only 76%. I have dis…