-
作者您好!我想请问一下*EasyMicrobiome/dbcan2/CAZyDB.08062022数据库在哪里呢?我没有找到。
如果使用以下方法下载的数据库是否是一致的呢?
```
访问CAZy官网:[https://www.cazy.org/;](https://www.cazy.org/%EF%BC%9B)
点击页面上方的“Download”按钮,进入下载页面;
在下载页面中,找到C…
-
Hi,
I was running `DRAM-v.py annotate` and it looked like it finished in 6 hours. I do have the annotations.tsv file. This is the Slurm output:
> 2022-10-20 20:20:57.811197: Viral annotation sta…
-
Hi,
I want to retrieve only the experimentally characterized cazy. Was the `-c CHARACTERIZED` argument set for this? I'm not sure how to set this argument since whether or not add `-c True` does not…
-
Hello, I have performed co-assembly of a whole metagenome consisting 8 samples.
I have gathered the orfs associated with my external database like following:
# get the information of GH families an…
-
I have created all protein datasets, please check them.
The following datasets do not exist, please retire the corresponding BCOs.
```
GLY_000824,dicty_proteoform_glycation_sites_uniprotkb.csv,ER…
-
I appear to be having the same issue as #53 with richly annotated MAGS but only CAZy annotation information in the final distillate. I note the this was solved by adding KOs to the KEGG descriptions h…
-
Hi, thank you for this awesome tool!
I have a couple of suggestions which may improve the (UX of the) software.
1) DB installation path: The `--setup` command doesn't allow to set a custom path …
-
I can't get the test example for E.coli to run. It errors in dbCAN_sub due to an index error as shown below.
Am I doing something wrong?
Thanks,
Jess
command:
run_dbcan EscheriaColiK12MG1655.…
-
I am sure you are on top of this -- if there is existing ticket for this, please link it here. If not, please make the BCOs and assign this ticket back to me.
```
NO-BCO,protein_glygen_mgi_xref_ma…
-
Hello!
Thanks for this amazing program, I love how straightforward it is! I had a couple of questions for you, if that's ok. We downloaded the databases for DRAM in 2021 (see attached
[db.txt](htt…