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Snakemake code: https://github.com/imgag/megLR/blob/main/workflow/rules/cnv.smk
- [x] implement
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Is there any parameter to determine sex when calling cnv in human? I noticed the parameter "--haploid-chr arg haploid chromosomes, e.g. chrX,chrY". Could this be helpful?
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Hi Tobias,
I am using delly to call CNV from long-read data with the command below:
```
delly cnv -u -z 100000 -o $out/tumor.bcf -l $vcf -c $out/tumor.cov.gz -g $ref -m $map $tumor
```
Here ar…
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## Prerequisites
Please make sure to check off these prerequisites before submitting a bug report.
- [+] Test that the bug appears on the current version of the dev-branch. Make sure to include the …
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There are pipeline scripts for these tools, but when i run i get a message saying that these are not available
ERROR:: The pipeline (CNV-freec) you have placed in the SEG file is not currently supp…
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Hi,
Thank you for developing such a wonderful tool!
I am currently looking to utilize the existing CNV profile via the `segs_consensus_fix `parameter to establish definitive CNV boundaries and stat…
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Hi everyone,
I am analyzing my scRNA-seq data and I have 12 samples. I have run inferCNV on each one of my samples and have all the results.
Now I want to combine all the results and draw a heatma…
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Hello @RCollins13 ,
Thank you for great work, I am trying to use this to plot CNV for bam generated from 10x longranger wgs pipeline
Using following steps, I take a random deletion start and…
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从istore安装的此插件,在1.0.0的时候,可以正确识别 RM500U-CNV 的tty(ttyUSB3),但是升级到1.4.0以后就识别错误,变成ttyUSB2,导致命令无法执行。
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HI all
Self explanatory hopefully. We have got a germline adaptive sampling panel working on Nanopore, and are generating copy number variants and SVs (including fusions) - do you think there is an…