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`read_dist()` should check whether the file provided is a lower triangular distance matrix, a square matrix, or not a valid format.
Details on phylip-formatted distance matrices: https://mothur.or…
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This is a meta-issue recording action items from a review of biomedical articles that cite SciPy and the results of a survey sent to authors of over 50 of these papers. In some cases, we can offer to …
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ctr26 updated
5 months ago
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Hi, thanks for your wonderful work and code! I am new to the equivariant learning area, and I am trying to understand each step of your code. I suspect [this function](https://github.com/atomicarchite…
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Instead of using my built in cover-tree approximate nearest neighbor lib, new options have popped up:
| | [NMSLIB](https://github.com/nmslib/nmslib) | [HNSWLIB](https://github.com/nmslib/hnswlib) |…
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It would be really nice to have a permutative post-hoc test equivalent (like the Turkey test) for distance matrices.
The implementation seems to be similar to a t-test, although the Mean Standard Err…
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Somebody came up with a fancy new technique to calculate repeatability for trajectories. This requires the computation of large distance matrices, and may therefore not be more efficient than what we …
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*This is for internal use only; if you'd like to open an issue or request a new feature, please open a bug or enhancement issue*
**Relevant background**
Now that we have the AnnData conversion…
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**Describe the solution you'd like**
Currently, if a user wants to use a custom distance metric for TSNE or UMAP, they need to _both_ input the original features (X), as well as the distance matrix (…
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Dear authors, I am trying to reproduce the results in your publication and I was wondering if you can you please provide the structures and the corresponding code to reproduce the generation of the ma…