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Hi Tim,
I downloaded the processed import-gasperini-2019-v2 data from the [dropbox link](https://www.dropbox.com/sh/jekmk1v4mr4kj3b/AAAhznGqk-TIZKhW40xiU6ORa?dl=0) you shared in [sceptre2-manuscript…
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Hi,
I have a question. In the reference files input for ABC model, can the list of genes be the differential genes only? I wonder if this is acceptable or if it biased the model somehow and should …
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Hi.
Would it be possible to have the Sequence Ontology terms in NOCTUA, so we could use them in the models?
Thanks,
Jesualdo
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Hi Authors,
Thank you for your fantastic tool; however, I am now experiencing a problem while attempting to use HiC data for the Hg38 version of the genome.
This was the Command used:
python ABC-…
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Dear authors,
I am trying to run the ABC model using publicly available ATACseq, H3K27ac, H3K27ac HiChIP and my own expression data, but am running into a lot of issues and was wondering if you cou…
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Curated by @MPiovesana.
https://canto.phi-base.org/curs/1e8f09364def576c#
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### Discussed in https://github.com/aertslab/scenicplus/discussions/371
Originally posted by **AthanasiaSt** April 25, 2024
Hello,
Thank you for the development of scenicplus and it's helpf…
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Hi,
I am trying to run this on my own dataset. I git cloned this repo yesterday and in the `config.yaml `there is a qnorm file that wasn't mentioned in the [methods](https://abc-enhancer-gene-predi…
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I am trying to tailor the script for the Gene of my interest. Repeatedly, I am getting this error:
ValueError: Input length must be divisible by the 2 to the power of number of poolign layers.
I r…
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Initial group info you provided:
-----------------
| Name | Department/Program | Expertise/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Samantha Sch…