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nucleotide-transformer
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
https://www.biorxiv.org/content/10.1101/2023.01.11.523679v2
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SegmentNT with a frozen encoder?
#78
Azai-yx
opened
1 week ago
0
A little bit different embeddings between jax and pytorch models
#77
nzhang89
closed
2 weeks ago
2
question about the arguments within the get_pretrained_model() function
#76
hongruhu
opened
1 month ago
0
72 load the checkpoints from hf
#75
dallatt
closed
1 month ago
0
feat: Fix inference notebook
#74
dallatt
closed
1 month ago
0
Fix inference notebook
#73
dallatt
closed
1 month ago
0
Load the checkpoints from HF
#72
dallatt
closed
1 month ago
0
Update README
#71
JavierMenRev
closed
1 month ago
0
Embeddings and hidden states of Agro-NT model (New to this field so please excuse my question if it is really naive/stupid.)
#70
NikeeShrestha
closed
2 weeks ago
3
Zero Shot Data?
#69
fma231
closed
1 month ago
1
Can‘t reproduce SegmentNT's MCC score on segmenting 5UTR on test set (chr20 and chr21)
#68
JasonLinjc
closed
3 months ago
1
how to get the segmentation dataset of genomics elements
#67
lightyisu
closed
3 months ago
1
error while executing the Google Colab inference_nt notebook
#66
amitpande74
closed
3 months ago
2
The length of input sequence for SegmentNT
#65
hezt
closed
3 months ago
1
where is the intermedia checkpoints
#64
TerminatorJ
closed
3 months ago
1
how to deal with the seq position of reference genome?
#63
zzzseeu
closed
3 months ago
1
Confusion about the max_positions value
#62
Cheerful0
closed
3 months ago
1
feat: Add verbose argument to bypass tqdm freeze
#61
dallatt
closed
5 months ago
0
Enable downloading model without tqdm
#60
dallatt
closed
5 months ago
0
Cannot download the pre-training weight
#59
HelloWorldLTY
closed
5 months ago
2
feat: Add text in SegmentNT notebook
#58
dallatt
closed
5 months ago
0
Add description to SegmentNT notebook
#57
dallatt
closed
5 months ago
0
feat: Fix mismatch in sequence position for Fig.3 reproducibility
#56
dallatt
closed
5 months ago
0
Fix mismatch in sequence position for Fig 3
#55
dallatt
closed
5 months ago
0
feat: Remove unwanted prints in the forward function
#54
dallatt
closed
5 months ago
0
Remove unwanted prints
#53
dallatt
closed
5 months ago
0
feat: Extend SegmentNT notebook
#52
dallatt
closed
5 months ago
0
Extend SegmentNT notebook
#51
dallatt
closed
5 months ago
0
46 fix typos in colab notebook
#50
dallatt
closed
5 months ago
0
46 fix typos in colab notebook
#49
dallatt
closed
5 months ago
0
46 fix typos in colab notebook
#48
dallatt
closed
5 months ago
0
46 fix typos in colab notebook
#47
dallatt
closed
6 months ago
0
Fix typos in colab notebook
#46
dallatt
closed
6 months ago
0
Port segment nt
#45
dallatt
closed
6 months ago
0
v2 checkpoints for TensorFlow
#44
felbecker
closed
6 months ago
3
Checkpoints are not downloading.
#43
princethewinner
closed
5 months ago
1
Training process for Nucleotide Transformer Model
#42
ghost
closed
3 months ago
1
NT nucleotide-level splice site prediction
#41
pabloacera
closed
5 months ago
1
Update README.md
#40
eltociear
closed
5 months ago
1
31 agront update
#39
e-trop
closed
7 months ago
1
feat: Add agro nt model
#38
dallatt
closed
7 months ago
0
Add Agro NT model
#37
dallatt
closed
7 months ago
0
Bug: jax version issues on TPU Colab
#36
hlydecker
opened
7 months ago
0
Provide more examples and real world use cases
#35
hlydecker
opened
7 months ago
0
Inquiry Regarding Details of Section A.5.4
#34
yangzhao1230
closed
5 months ago
1
Can I simply take 'CLS' token as my sequence representations?
#33
Azai-yx
closed
9 months ago
1
Prediction using fine-tined model with LoRA
#32
FadelBerakdar
closed
6 months ago
1
30 update readmetxt
#31
dallatt
closed
11 months ago
0
Update README.txt
#30
dallatt
closed
11 months ago
0
28 fix v2 api
#29
dallatt
closed
11 months ago
0
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