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Hello,
Do you think TRUST4 can work with whole exome sequence (WES) data? Perhaps, it could provide more information if it runs for both normal blood and normal samples. If not, do you know any ot…
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For CLE, ingest will compose of two steps.
1. Trim a CSV ingest file down to only samples listed that do not currently exists.
2. Do the actual ingest with the newly created trimmed-down list.
This …
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Copy/pasting from source: https://github.com/openjournals/joss-reviews/issues/5313#issuecomment-1497107263
Thanks for pointing me to the script, I was able to download the required reference files!…
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Emailed them a while back describing how they need to prepare their data for us.
Gene-level analysis is still underway.
Point of contacts: Hailiang, Kai, and Mingrui
See: https://airtable.com/app…
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Hello @Beifang -
I am an avid fan of MSIsensor and routinely use it in the calling of MSI status from exome sequencing data. Recently we have started to switch our analysis to RNAseq data and I wa…
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![cumulative_corrected_bases_stack_exome](https://cloud.githubusercontent.com/assets/14796101/21828654/8415c95a-d746-11e6-93c5-1b6abbb5d384.png)
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Hi,
Any (every) time I run an applet with `dx run` as in:
```
dx run cram2bam \
-icram_in="/Bulk/Exome sequences/Exome OQFE CRAM files/43/4384617_23153_0_0.cram" \
-iref_fasta="CH_Exome…
ghost updated
3 years ago
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I get the following error when I run somalier relate on about 1000 exomes. Even exomes that are likely from the same individual are being flagged as "unrelated" (possibly because most of the variants …
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I've noticed that covmed estimates higher median coverage than other tools. For example for a particular whole genome covmed estimates 33.4, while Picard CollectWgsMetrics estimates 27.
I've perform…