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brentp
/
goleft
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
MIT License
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exit zero for "help"
#78
kdm9
closed
1 week ago
1
crai resolution in output-indexcov.bed.gz
#77
corinsexton
closed
2 months ago
4
Bump golang.org/x/image from 0.11.0 to 0.18.0
#76
dependabot[bot]
opened
3 months ago
0
Release Linux aarch64 binary
#75
martin-g
closed
5 months ago
4
indexcov everything is DEL or DUP
#74
lindenb
closed
6 months ago
2
covstats: % unmapped calculation seems inaccurate (>3000%, etc)
#73
aofarrel
opened
9 months ago
5
Indexcov searching for cram.bai
#72
hdashnow
closed
2 years ago
1
indexcov: usage with long reads ?
#71
colindaven
closed
9 months ago
1
What is the value of the insert size ?
#70
Taalouane
closed
2 years ago
2
Running Indexcov on cram files with different paths
#69
Saeideh-Ashouri
closed
3 years ago
2
No longer possible to build from source or include in a Docker image
#68
aofarrel
closed
3 years ago
2
Negative alnSpan error
#67
jjfarrell
closed
3 years ago
2
error on depth, seems to make temp file it can't find
#66
bioinfowheat
opened
4 years ago
0
Indexcov errors
#65
emmakwiener
opened
4 years ago
2
Feature request: New option --exclude for covstats
#64
YiweiNiu
closed
4 years ago
2
indexcov shows stepwise coverage distribution
#63
mattsoup
closed
4 years ago
4
suggestion: zoomable chromosome depth plots in indexcov
#62
edg1983
closed
4 years ago
1
Update README.md
#61
timtribu
closed
5 years ago
0
link to golang typo
#60
przemekl
opened
5 years ago
0
error: bam is required
#59
clersdom
closed
5 years ago
4
coverage of the customized genome
#58
weizhu365
opened
5 years ago
2
goleft_linux64 covstats error: panic: EOF
#57
YiweiNiu
closed
5 years ago
7
ndexcv: excluding chromosome: NC_031965 because of exclude-pattern: ^chrEBV$|^NC|_random$|Un_|^HLA\-|_alt$|hap\d
#56
astridboehne
closed
5 years ago
2
indexcov support for csi indexes
#55
mcshane
opened
5 years ago
2
Feature request: New option --exclude for indexsplit
#54
andreas-wilm
opened
5 years ago
1
goleft depth sliding window analysis
#53
lyy005
closed
5 years ago
1
Differential header stringency depending on file format
#52
ernfrid
opened
5 years ago
4
Can it be used for NIPT samples?
#51
GreeshmaThulasi
closed
5 years ago
1
How to generate the X-Y plots?
#50
GreeshmaThulasi
closed
5 years ago
2
indexcov returns "no reference stats found"
#49
tdelhomme
closed
5 years ago
6
Suggestions : paths ; case/control
#48
lindenb
opened
6 years ago
3
indexsplit for 2000 samples fail
#47
veeravalli
closed
6 years ago
2
Installation & integration with STRetch
#46
jbsysadmin
closed
6 years ago
2
covstats supporting cram
#45
hdashnow
opened
6 years ago
10
indexcov: "panic: sam: malformed header line"
#44
lindenb
closed
6 years ago
4
panic in crai.makeSizes
#43
kpalin
closed
6 years ago
4
two typos
#42
colindaven
closed
6 years ago
2
indexcov --sex ''
#41
colindaven
closed
6 years ago
10
indexcov Unable to run on contigs without a sex chr
#40
mahesh-panchal
closed
6 years ago
2
Interactive indexcov-depth html's missing (and no warning given for 100 input files)
#39
andreas-wilm
closed
6 years ago
1
indexcov: panic parsing time
#38
CarlosBorroto
opened
6 years ago
0
indexcov: Handles at most 31 input files (bigger inputs result in nasty error message)
#37
kpalin
closed
6 years ago
9
indexcov: different coverage scale with cram and bam inputs
#36
kpalin
closed
6 years ago
7
call to unintended version of samtools
#35
biocyberman
closed
6 years ago
1
Support for more than one RG?
#34
drmjc
closed
6 years ago
7
indexcov error
#33
itsvenu
closed
6 years ago
8
indexcov : won't work with multiple crais
#32
javierpradom
closed
7 years ago
4
crai -- panic: runtime error: index out of range
#31
javierpradom
closed
7 years ago
2
test
#30
brentp
closed
7 years ago
0
indexcov: producing .html but no other files
#29
stephenwilliams22
closed
7 years ago
4
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