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Hi all,
I am trying to extract the rrpa data for several of the cohorts but noticed in the files names that the data generation time seems a bit old (20160128):
```R
curatedTCGAData("acc", vers…
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when i parse out data by improve sample ID i can't distinguish the model type
![Screenshot 2023-10-06 at 4 39 58 PM](https://github.com/PNNL-CompBio/candleDataProcessing/assets/1847866/45b731f8-5478-…
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Hello
my R version is R 4.3 and my libraries are up to date. I have a problem with GDC query.
I am trying to build a gdcquery for copy number variation, but it does not work, It seems that my R cou…
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hello, thanks for developing this fantastic package! i am working on porting one of my projects from openslide to tiffslide (very easy thanks to mirrored API :smile:). however i found that tiffslide i…
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### What problem does this feature solve?
I am a Ph.D. in genetic research, I found ECharts very helpful for the presenting statistics of metadata of clinical and biological data.
I am wondering whe…
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I am trying to download the TCGA data to follow the PyDESeq2 step-by-step pipeline but I can't find the files TCGA-PAAD_clinical.tsv.gz and TCGA-PAAD_raw_RNAseq.tsv.gz in https://portal.gdc.cancer.gov…
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Hi,
My R version is 4.3.0 and my library are up-to-date. When I tried to use the GDCquery to look for data, it shows error in opening connection. The error log is printed as below. It works just f…
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Hi, appreciate for your work. I tried but I can not find the way to download the dataset(ESCA and KICA) you used in your work, could you share the data with me? It's very helpful, thank you!
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https://mp.weixin.qq.com/s/IuFSyqIPVZ_VB8opFoISVA
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I am trying to use the vcf files generated from WES data in the TCGA (https://portal.gdc.cancer.gov/repository). I tried running PureCN using the MuTect2 vcfs (controlled access), but this resulted in…