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PNNL-CompBio
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coderdata
Automation scripts and benchmark dataset package for cancer drug prediction deep learning models.
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Drugs, BeatAML, CanSMILES Updates
#252
jjacobson95
opened
14 hours ago
0
MPNST sample updates AND PDX code addition
#251
sgosline
opened
1 day ago
8
Update MPNST and build_dataset.py README.md files
#250
jjacobson95
opened
2 days ago
0
SMILES Update
#249
jjacobson95
opened
2 days ago
0
Why do we create new drug IDs (improve_drug_id)?
#248
jjacobson95
opened
1 week ago
10
Update CLI to enable data query and download
#247
sgosline
opened
1 week ago
0
Update python functions to adhere to simpler standards and pre-format data
#246
sgosline
opened
1 week ago
4
Revert "provided framework for coderdata UI"
#245
sgosline
closed
1 week ago
0
Train test validate
#244
ymahlich
closed
1 week ago
1
provided framework for coderdata UI
#243
sgosline
closed
1 week ago
0
allowed hill slope to be positive
#242
sgosline
closed
1 week ago
0
remove drugs from CTRP dataset
#241
sgosline
opened
3 weeks ago
7
Schema Issues Found
#240
jjacobson95
closed
1 week ago
1
Add more robustness in Synapse file download scripts.
#239
jjacobson95
closed
1 week ago
1
NCI60 Polars Version Error
#238
jjacobson95
closed
1 week ago
0
Cell Line Datasets Separated, Improved Error Handling for all Build Scripts
#237
jjacobson95
closed
1 week ago
10
NCI60 - Several incorrect values in chem_name
#236
jjacobson95
opened
1 month ago
7
NCI60
#235
jjacobson95
closed
1 month ago
0
Should the schema be modified to allow "inf" values in dose_response_value?
#234
jjacobson95
closed
1 week ago
1
Validation ending with a success message even when failing.
#233
jjacobson95
closed
1 week ago
0
Nci fix
#232
sgosline
closed
1 month ago
2
NCI60 has more than 60 cell lines in our current data
#231
jjacobson95
closed
1 month ago
3
Migrate from R to Python where possible.
#230
jjacobson95
opened
1 month ago
0
Dataset consistency
#229
ymahlich
closed
1 week ago
3
Dataset description
#228
ymahlich
closed
1 week ago
1
Break down broad_sanger datasets into individual datasets with no duplicates
#227
sgosline
closed
1 week ago
11
Several Build Updates
#226
jjacobson95
closed
1 month ago
2
Species Information Discrepancies between datasets
#225
jjacobson95
closed
1 month ago
0
HCMI Samples improve_sample_id issues
#224
jjacobson95
closed
1 month ago
0
Rare HCMI Omics Issue resulting in missing data during build
#223
jjacobson95
closed
1 month ago
2
Documentation update: Update instructions on Installing data
#222
jjacobson95
closed
1 week ago
1
Documentation update: Add which Datasets are contained within broad_sanger.
#221
jjacobson95
closed
1 week ago
1
HCMI Omics Build Issues
#220
jjacobson95
closed
1 month ago
1
Updating CPTAC version
#219
jjacobson95
closed
1 month ago
1
Updating CPTAC version
#218
jjacobson95
closed
1 month ago
0
add ability to generate basic statistics for the individual datasets
#217
ymahlich
opened
1 month ago
1
Documentation Site Counts, Figures, Plots are Out of Date
#216
jjacobson95
opened
1 month ago
0
SSL Certification Error in 02a-broad_sanger_proteomics.py
#215
jjacobson95
closed
1 month ago
1
Broad Sanger Omics Step Failing in Build_All.py
#214
jjacobson95
closed
1 month ago
1
Stratification / balancing of train / test / validate according to drug efficacy
#213
ymahlich
closed
1 week ago
3
add disjoint-set splitting to train_test_validate
#212
ymahlich
closed
1 month ago
1
missing pyproject.toml
#211
ymahlich
opened
1 month ago
2
figshare-latest.yml / setup.py out of date
#210
ymahlich
opened
1 month ago
1
Add Metadata to CoderData package
#209
jjacobson95
opened
1 month ago
1
Create build_dataset.py script for building and debugging individual datasets
#208
jjacobson95
closed
1 month ago
3
Add in additional cell line proteomics data
#207
sgosline
opened
2 months ago
0
MPNST Data issue - non-overlapping improve_sample_ids
#206
jjacobson95
closed
2 months ago
7
Update build_all.py help function and Readme
#205
jjacobson95
closed
1 month ago
2
MPNST samples generation is failing due to a dependency issue
#204
jjacobson95
closed
1 month ago
7
Drug Mechanism of Action
#203
jonesse3
opened
3 months ago
4
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