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PNNL-CompBio
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coderdata
Automation scripts and benchmark dataset package for cancer drug prediction deep learning models.
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Drug Mechanism of Action
#203
jonesse3
opened
3 months ago
4
Coderdata build_all script does not update download location
#202
sgosline
closed
2 months ago
5
Coderdata install does not work
#201
sgosline
closed
3 months ago
0
Scripts and module to add in MPNST PDX data
#200
sgosline
closed
2 months ago
2
Fixed problem with hill slope
#199
sgosline
closed
4 months ago
0
Add in goodness of fit curve statistics for curve fitting
#198
sgosline
closed
4 months ago
1
Document curve fitting script to describe columns
#197
sgosline
opened
4 months ago
1
add doc update to build script
#196
sgosline
closed
1 month ago
6
updated docker build to save time
#195
sgosline
closed
4 months ago
0
Add in data from MPNST cell line drug screen
#194
sgosline
opened
5 months ago
1
build script no longer works in proper order
#193
sgosline
closed
1 month ago
3
Drug descriptor addition to pipeline
#192
sgosline
closed
4 months ago
1
fixed CI bloat
#191
sgosline
closed
5 months ago
0
contributors guide and readme updates
#190
sgosline
closed
5 months ago
1
contributing page has no details
#189
sgosline
closed
4 months ago
2
added croissant metadata generator and file
#188
sgosline
closed
5 months ago
0
updated HCMI to include more metadata
#187
sgosline
closed
6 months ago
0
HCMI sample file is missing important metadata and does not cover the entire repository
#186
sgosline
closed
5 months ago
0
create utility script to conform to common cancer types
#185
sgosline
opened
6 months ago
1
mpnst copy number data has additional column
#184
sgosline
closed
6 months ago
0
Sample schema fix
#183
sgosline
closed
6 months ago
1
beataml experiments still using old dose respones metric columns
#182
sgosline
closed
6 months ago
0
mpnst sample files missing 'other names' column
#181
sgosline
closed
6 months ago
0
beataml and hcmi sample files missing species
#180
sgosline
closed
6 months ago
0
added instructions for synapse download
#179
sgosline
closed
6 months ago
12
Column labels as multiple rows in experiments dataframe
#178
nkoussa
closed
5 months ago
1
BeatAML Drugs not generating correctly.
#177
jjacobson95
closed
6 months ago
2
added fix for copy number
#176
sgosline
closed
6 months ago
0
Parallelization of build_all.py
#175
jjacobson95
closed
5 months ago
2
Inconsistency in copy_call values
#174
nkoussa
closed
6 months ago
2
Nci60 and other fixes
#173
sgosline
closed
6 months ago
1
cptac samples failing when running from build_all.py
#172
jjacobson95
closed
6 months ago
1
broad_sanger_omics samples generation error
#171
jjacobson95
closed
6 months ago
2
not enough free space error when running python build/build_all.py --docker
#170
coleslaw481
closed
6 months ago
1
Local build doesn't work without synapse login permissions
#169
sgosline
closed
6 months ago
0
HTTPS_PROXY key error when trying to run python build/build_all.py --docker
#168
coleslaw481
closed
6 months ago
2
No 00-buildGeneFile.R file in broad_sanger
#167
coleslaw481
closed
6 months ago
1
unable to build docker described in broad_sanger/README.md
#166
coleslaw481
closed
6 months ago
3
HCMI Samples file is skipping some improve_sample_id values.
#165
jjacobson95
closed
5 months ago
1
Broad_Sanger Samples File has duplicate improve_sample_ids and maybe more issues
#164
jjacobson95
closed
5 months ago
2
MPNST datasets' "improve_sample_id" not aligning with the coderdata version 0.1.26
#163
moonchangin
closed
6 months ago
3
tutorial missing download step
#162
sgosline
opened
6 months ago
3
broad_sanger experiments file not concatenatated correctly upon creation
#161
jjacobson95
closed
6 months ago
5
broad_sanger samples file has quotes around all values - (breaking Polars during testing)
#160
jjacobson95
closed
4 months ago
5
Convert Python Package from Pandas to Polars
#159
jjacobson95
opened
7 months ago
8
Add multi-processing to drug curve fitting
#158
jjacobson95
closed
6 months ago
1
Docker cleanup
#157
sgosline
closed
7 months ago
0
Update README to have contributing guide
#156
sgosline
closed
5 months ago
1
Update local build script for efficiency and upload
#155
sgosline
closed
5 months ago
0
Ensure all datasets have the same transcriptomics normalization metric
#154
jjacobson95
closed
4 months ago
3
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