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Test assembly: [Xamarin.TVOS.dll.zip](https://github.com/mono/mono/files/7516082/Xamarin.TVOS.dll.zip)
Repro:
* Download & extract test assembly
* Execute `mono-cil-strip Xamarin.TVOS.dll Xamarin…
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Hi there!
I am using pilon to polish contigs produced in a hybrid assembly using opera and pilon is running at a really slow rate - about 102 contigs per hour. I have allocated 48 CPUs and 1.5Tb me…
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If i run without parameters, i get the usage as expected.
then if i run with parameters
scaff10x -nodes 30 funestus_redbean.purged.fa bamtofastq_S1_L000_R1_001.fastq.gz bamtofastq_S1_L000_R2_001.f…
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Hi,
Firstly, thanks for making this tool available for the community. In our hand this tools has been very efficient and has produced very good results with illumina-MinION hybrid data.
I wante…
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Hello Aleksey,
I was wondering if I could use Nanopore and Pacbio together for the hybrid assembly. We have about 70x pacbio, 20x long-read Nanopore, and ~ 100x Illumina for a 650 Mb genome. What …
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17:35:36 [Error] [RedisProvider] [Kittehcoin] Redis storage initialization failed: 127.0.0.1:6379 - This method is not implemented by this class.
17:35:37 [Error] [Pool] [Kittehcoin] Pool initilizati…
ghost updated
6 years ago
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I have generated a hybrid assembly with Pilon using the following:
`pilon -Xmx30G --genome $long_assembly --frags $short_assembly_sorted --output $prefix --outdir $path/pilon_outputs --changes --v…
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## Background and Motivation
I regularly use SOS to diagnose issues (particularly from user submitted crash dumps), but also live debugging sessions. The particular software application in my case i…
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I am scaffolding several ONT+illumina assemblies (flye) against a T2T reference genome of a sister species. Each of my assemblies represents a specific strain of my species of interest--so while I exp…
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### Description of bug
I used spade for hybrid assembly of the second and third generations. The resulting file contains scaffold.fa and contig.fa. May I ask which file should I use as contig?
### s…