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Hi Vadim,
1. I usually use the iq or diann R package to process the main report.
process_long_format("df.tsv", output_filename = "iq.tsv",annotation_col = c("Protein.Names", "Genes"),
filter_do…
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I applied your script on my data. As you can see in the metadata I have a column called traitment with ( CTRL , TR1 ,TR2 and TR4)
ko_abundance_file
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I runned this script:
library(readr)
library(ggpicrust2)
library(tibble)
library(tidyverse)
library(ggprism)
library(patchwork)
# Load necessary data: abundance data and metadata
abundance_f…
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Hi Silas,
I have a question regarding the output written to the 'results' folder:
(1) KO.tsv
Structure is:
MAG K00001 K0002 etc..
MAG1 1 1
and the file written to the G…
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Hi Torsten,
Is it possible to include KOs in the output as well?
Thank you,
Jie
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HI, I was trying to plot my enriched heatmap using a normalized matrix. Unfortunately, when I try to plot it, I can see only half of the heatmap plotted. Could you help me to see where the error comes…
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Dear Kenji,
Thank you for sharing and maintaining this great tool, CellOracle, with great documentation and tutorials!
I'm trying to build GRNs in early zebrafish embryos using our own single-ce…
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I created a new project Symfony 4.2.8 (PHP 7.3.4).
Transferred files from the old project (on PHP 7.1).
When I try to open a site page, I get an error.
`InvalidConfigurationExceptionThe child node…
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For private HTTP git repositories, the name references a secret in the namespace that contains username and password.
```apiVersion: shipwright.io/v1alpha1
kind: Build
metadata:
name: builder-z…
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Dear GuangChuang:
I have two bacteria organisms.
Klebsiella pneumoniae Kp-1 (https://www.ncbi.nlm.nih.gov/nuccore/CP012883.1) and Pseudomans protegens Pf-5 (https://www.ncbi.nlm.nih.gov/nuccore/CP00…