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Hi, I've noticed a discrepancy in the window quantification information, where different default window sizes are noted. I have CRISPResso 2.025 installed and it says default window size is 1. However…
bbsos updated
9 months ago
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Dear all,
What an excellent package – I wish I had known about QuaPy earlier! Albert Ziegler and I were working on a [Bayesian quantification estimator](https://arxiv.org/abs/2302.09159) (with the …
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- Describe the issue or question:
I would like to ask if I use DIA_SpecLib_Quant as the template when I use fragpipe for DIA search without building a library, but I have some ungraded DDA data from …
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According to @irisdianauy report.
Many E-PROT experiments have nothing under the Supplementary Information tab. Doesn’t seem like by design, because when you do click on the Supplementary Information…
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- Describe the issue or question:
Using a large fasta database (with decoys) 8.4 GB fails. Running a smaller fasta database 1.7GB works fine (without slicing).
- Upload your log file
(If a log …
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### Description of the bug
I wish I could state anything that would sound helpful here. The script triggering the issue is ./modules/local/celda/decontx/templates/decontx.py and I agree that sizes…
smoe updated
4 months ago
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Hello, I am curating 10X single-cell data for repertoire loading into iReceptor and I have a question about metadata annotation.
Regarding the cell_phenotype field, I am wondering how to represent…
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the fragpipe doesnt see IonQuant version: 1.10.27...however its not visisble in the config.(see the photos)
it was ok till i started to load dia files..when i got back with dda it was no functional a…
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I'm trying to preprocess SST data in all the historical CMIP6 runs and running into an issue with `combined_preprocessing`. This happens with any of the models/members but is shown below for a single …
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Hi
I have been trying for 3 days but still coulnd't get it work on my end. Sorry I have very little knowledge and training in bioinformatics so please bear with me with the basics. I had RNA-seq da…