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Hello,
I am new to cromwell and trying to run a test workflow on GPC. I am using the PAPIv2 backend and here is my config:
```
$ cat genomics.conf | grep -v '#' | sed '/^$/d'
include required(c…
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As a side activity of #220 we've also been discussing how we can get more quality Dask videos on YouTube. It's a popular place for folks to go and learn and we can always add more.
The working grou…
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Hi, first of all thanks for this secapr pipeline. I am analysing a gene capture dataset of 60 specimen and 484 genes.
I have an issu with loci alignments, when I run secapr_alignment the pipeline all…
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[Nature announcement](http://www.nature.com/news/interactive-notebooks-sharing-the-code-1.16261) and [demo](http://www.nature.com/news/ipython-interactive-demo-7.21492)
[Jupyter gallery](https://gith…
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Easy to trigger, just submit a bunch of Tiff from the MD.
This error is systematic, you can't miss it.
Obvious reason: regular expression code is not extracting the proper info from MD file names.
It …
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Background extraction (back_extract) is functional but not particularly awesome.
Once there are more images, implement a machine learning image classification step to find seals.
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I have NimbleMiner installed, but I can't figure out what to do with the UI features. The very first tab is for category. But no where in the paper did the term category come up. Same is true with the…
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Documentation should include for each tool:
- A summary of all output folders and their contents
- A data dictionary documenting each data file
dkav updated
7 months ago
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Hi there,
I am stuck at the step of identifying the width of the worm, as when I click OK, Fiji gives me "macro error", saying:
";" expected in line 55
l = line_width 0.8 ;
How could I reso…
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Project Lead: @samuelorion
Mentor: @unode
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