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pelkmanslab
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iBRAIN_BRUTUS
A version of canonical iBRAIN (2015) deployed on BRUTUS cluster
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Problem with Nikon image renaming/handling
#39
victoriagreen
closed
8 years ago
1
Gene Ids are not substituted from GeneLookUp
#38
ewiger
closed
8 years ago
2
Error in a single job SimpleMulti_LoadSegmentedObjects, project
#37
ewiger
closed
8 years ago
3
Bug in Module MeasureLocalizationOfSpots
#36
dorispgithub
opened
8 years ago
0
Individual colors on individual sites blacked out in Jpg Overview
#35
dorispgithub
opened
8 years ago
2
Create_Jpgs codes (Normal and LIB folder related) do not work with MD images.
#34
Mat-ABM
opened
8 years ago
9
merge_jpgs_per_plate should produce 2 plate overviews when RGB1 and RGB2 are present
#33
GitMotz
opened
8 years ago
0
create_jpgs_illumination_corrected did not process full plate
#32
GitMotz
opened
8 years ago
1
IlcorJPGs not created
#31
ggut
closed
8 years ago
4
Illcor jpgs
#30
ewiger
closed
8 years ago
0
Create jpegs failed from MIPS?
#29
ewiger
opened
8 years ago
3
New module: create_illcor_jpgs
#28
ewiger
opened
8 years ago
6
**create_jpgs** and **precluster** steps are breaking in iBRAIN_BRUTUS/fmi.php
#27
ewiger
closed
8 years ago
1
Bug in "RelateObjects" module
#26
ewiger
opened
8 years ago
5
Fixes contained in non-main branches
#25
tstoeger
closed
8 years ago
2
fuse_basic_data_v5 creates (misleading?) error
#24
tstoeger
closed
7 years ago
1
stitchWellSegmentationPerWell does not support LIB and thus bugfixes
#23
tstoeger
closed
9 years ago
1
get_image_snake breaks on slides (with many sites)
#22
tstoeger
closed
8 years ago
1
Incomplete illumination correction for slides scanned on CV7K
#21
tstoeger
closed
9 years ago
4
PNG conversion is broken after update of imagemagick
#20
ewiger
closed
9 years ago
2
Strange warning / possibly wrong pathdef
#19
tstoeger
closed
9 years ago
1
Absent check for correct number of images per well
#18
tstoeger
closed
9 years ago
1
Old or missing code for the Tracker module
#17
ewiger
closed
9 years ago
6
CreateBatchFiles Module default set to Matlab, not compiled
#16
reinouddegroot
closed
9 years ago
7
do_bin_correction does not run
#15
ewiger
closed
9 years ago
4
SVM file convention can break Gather_CellTypeData_iBRAIN2
#14
ewiger
opened
9 years ago
0
bordercells not detected
#13
reinouddegroot
opened
9 years ago
0
nan in illumination correction
#12
tstoeger
closed
9 years ago
5
png conversion test required
#11
tstoeger
closed
9 years ago
1
No resubmission or no LIB?
#10
tstoeger
closed
9 years ago
1
reportedly incomplete datafusion / corrupted files
#9
tstoeger
closed
9 years ago
15
Wrong count of images (tiffs from microscope)
#8
tstoeger
closed
9 years ago
3
LIB functionality not working
#7
tstoeger
closed
9 years ago
1
Difficult to add paths to iBrain via a Windows machine
#6
tstoeger
closed
9 years ago
3
Errors in fuse_basic_data_v5
#5
ewiger
closed
9 years ago
4
Illum. correction stats do not list number of images
#4
tstoeger
closed
9 years ago
1
function 'mad2' is missing
#3
ewiger
closed
9 years ago
0
BASICDATA.mat is not created
#2
ewiger
closed
9 years ago
3
Usage of multiple copies of same function
#1
tstoeger
closed
9 years ago
3