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Please post questions or discussion about the iSamples terms in this issue.
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Joey-
In your "Waste not, want not" paper you suggest that researchers interested in PCA and clustering ought to consider using variance stabilized data rather than proportions or rarified data.
DEs…
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Hi, I'm trying to run amr++ with the RGI option, but am having some problems. When I run the images that don't use RGI (meglab-metagenomics-amrplusplus_v2.img with main_AmrPlusPlus_v2.nf
main_AmrPlu…
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The `calculateDistance` is using the various dissimilarity indices that are available through vegan. Some of those are not _distances_, for instance Bray-Curtis is not a distance (it does not satisfy …
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After updating to the latest version of scholarly (1.4.0) I have been having issues filling the author container for some but not all authors.
As an example, when I search for the first ID in the c…
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First, I'd like to thank you for previous help in getting anvi'o working.
However, now that I can use anvi-refine to improve bins, I realized that I am a bit stuck on the deeper issue of when exact…
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Hello developers,
I am trying to run PredicTF and am running into some issues. The installation (on Ubuntu 16.04.6 LTS, 40 cores, 1.5TB RAM, local installation, no GPUs on this system(and hence i d…
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**Submitting author:** @kescobo (Bonham, Kevin)
**Repository:** https://github.com/EcoJulia/Microbiome.jl
**Version:** v0.8.2
**Editor:** @will-rowe
**Reviewer:** @adRn-s, @aguang
**Archive:** 10.5281…
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**Submitting author:** @bramvandijk88 (Bram van Dijk)
**Repository:** https://github.com/bramvandijk88/cacatoo
**Version:** 1.0.3
**Editor:** @Bisaloo
**Reviewer:** @emilydolson, @TimKam
**Archive:** …
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Hi,
I was using Mothur 1.45.3 to align ASV sequences againts a custom reference database. I was suprised of the poor PairwiseAlignmentLength scores obtained with align.seqs() (typically a dozen bel…