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Details here:
http://en.wikipedia.org/wiki/Needleman%E2%80%93Wunsch_algorithm
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### Setup
3.8.3 | packaged by conda-forge | (default, Jun 1 2020, 17:21:09)
[Clang 9.0.1 ]
CPython
macOS-10.15.6-x86_64-i386-64bit
1.77
### Expected behaviour
I was trying to align [Q92…
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In Heptapod by bitbucket_importer on May 23, 2011, 22:01
*Created originally on Bitbucket by [etal (Eric Talevich)](https://bitbucket.org/[7.3.7](https://github.com/gitlab-importer/pypy/milestone/7)B…
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This seems counter to the aim of the algorithm - test whether this is needed and fix as necessary.
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Hi all,
I'm the main developer of the Perl Bio::Parser::ISATab module.
For ages it has been read-only, but I'm finally working on write functionality.
It's a real challenge to figure out which co…
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The last character of the tree display is getting truncated. See the reading of the R manuscript here (dadasva m**e**). The reading is correctly shown in the apparatus.
This doesn't always happ…
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Benchmarking shows that for large alphabet inputs, the majority of time is spent on string alignment. This is to be expected. However the current implementation of the naive and Ukkonen Needleman-Wuns…
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Hello,
I tried to run diamond onto CentOS server but got error message. It runs on my laptop without any troubles...
The diamond was builded from sources.
````
(base) [ieborisenko@110-17225-1324 p…
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What is the difference?
```
-alg STR gapped alignment algorithm (option: nw|ksw2)
```
nw = Needleman-Wunsch = glocal alignment = whole read must align?
ksw2 = Smith-Waterman = local ali…
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Hi everyone,
Could somebody explain to me how the tool actually works, particularly the PEPMatrix algorithm?
I have read this article: https://www.ncbi.nlm.nih.gov/pubmed/21644507, but I still have …