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Currently each `belongs-to-lineage` section is a list of dictionaries with one key:value pair in each. For instance, `carnival-shimmy` looks like: `[{'PANGO': 'B.1.351'}, {'nextstrain': 'N501Y.V2'}]`,…
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Motivated by: https://discussion.nextstrain.org/t/how-to-viz-flu-vaccine-strain-as-the-nextstrain-seasonal-flu-page/1469
I wasn't sure where to place the documentation, perhaps in the [FAQ](https:/…
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Nextstrain.org uses a customised version of auspice, typically built via `./build.sh auspice` or similar. We also allow the use of auspice's dev server in order to develop these customisations. This d…
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from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1603
![image](https://github.com/user-attachments/assets/841ee3cc-f216-487f-bcd9-ad1ccb1c7ce4)
tree: https://nextstrain.org/fetc…
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XDV.1+C28657T+C9430T,del21653_21655(S:S31del)
GISAID query: C28657T, C9430T,del21653
No. of seqs: 3(China 1 South Korea 2)
This is the 1st time I see a branch with S31-+S:F456L without R346T or…
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Reported by @tsibley [here](https://github.com/nextstrain/nextclade/pull/1455#issuecomment-2140691617)
> For me, the "Suggest automatically" feature of Nextclade was enabled by default (though it s…
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From @corneliusroemer in https://github.com/nextstrain/docker-base/issues/222#issuecomment-2252408827:
I didn't realize how out of date our pins are compared to conda-base (which is usually using l…
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Hello, I don't have GISAID_FEED, so I can't use gisaid data. However, the location number is extramley small.
['Asia / Pakistan', 'Europe / United Kingdom',
'Europe / United Kingdom / England…
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Originally from https://github.com/nextstrain/zika/pull/28#discussion_r1457994982
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We should pick between either [IANA TSVs](https://www.iana.org/assignments/media-types/text/tab-separated-values) or [RFC 4180 CSV-like TSVs](https://datatracker.ietf.org/doc/html/rfc4180) and then be…