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https://github.com/labsyspharm/mcmicro-nf/issues/126
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## 🚀 Feature
An option to remove stacks with a ROI signal below a certain threshold
## Motivation
When segmenting ROI such as cells or nuclei, cellpose appears to normalize the signal in each i…
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Dear Cellpose team, thanks for your great tool.
We love the quality of segmentation we obtain by using `Cellpose`. Currently, we are trying to figure out whether we can increase throughput to satur…
VarIr updated
3 months ago
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Hi,
I have been meaning to try this tool for some time now. We do a lot of single-nuclei RNA-seq, as a result we end up capturing lot of reads from the pre-mrna . In order to deal with that , 1…
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@metavibor @constantinpape @imagirom
I am opening this issue to collect and discuss ideas about background subtraction.
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@zachmullen @danlamanna
[worker.format.converter_path](https://github.com/girder/girder_worker/blob/master/girder_worker/format/__init__.py#L95-L113) raises NetworkXNoPath but does not specify sourc…
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### Nuclei version:
latest (3.2.9)
### Current Behavior:
SIGSEGV when running workflow that includes template using headless protocol despite not enabling headless
### Expect…
sttrv updated
21 hours ago
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Hi, I am testing out ilastik for nuclei segmentation and it seems to work pretty well.
however, when I output my prediction maps and convert to a certain bit type (i.e., 16-bit unsigned) I am havi…
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Hi @royerloic ,
thanks again for paving this path. I played a bit with your code and found [this place](https://github.com/royerlab/napari-chatgpt/blob/64788b3518071aeb8577e99c8cacc18e3c49eea2/src/…
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I have Trainable_Segmentation-Trainable_Segmentation-3.2.12.jar in /usr/share/imagej/plugins, where also other installed plugins (jars) are and are working, ie. "Volume Viewer" and "3d Viewer"
It …