hci-unihd antibodies-analysis-issues issues

hci-unihd / antibodies-analysis-issues

Issue tracker for problems in the antibodies analysis workflow.

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#90 tischi closed 4 years ago
3
Test - 20200417_152052_943 - D07-0004

#89 tischi closed 4 years ago
0
Misclassified cells in corners - plateU7rep1_20200519_210009_665 - C04-0005

#88 imagirom opened 4 years ago
12
Huge Cell (Probably not a problem) - plateU1rep1_20200519_102648_382 - F10-0000

#87 imagirom opened 4 years ago
1
Mistake in segmentation leads to cells being incorrectly classified as infected - plateU1rep1_20200519_102648_382 - F10-0004

#86 imagirom opened 4 years ago
3
Control cells classified as infected - plateU1rep1_20200519_102648_382 - C01-0004

#85 imagirom opened 4 years ago
2
QC: Minimal intensity of infected cells

#84 tischi opened 4 years ago
7
Background subtraction

#83 tischi opened 4 years ago
15
QC: Cell size

#82 tischi opened 4 years ago
26
QC: Minimal number of control cells

#81 tischi opened 4 years ago
4
IgG intensity variaton in infected cells - plateK25rep1_20200512_123527_554 - C01-0004

#80 tischi opened 4 years ago
3
QC: Number of cells per image

#79 tischi opened 4 years ago
3
Nucleus oversegmentation - plate9_2rep1_20200506_163349_413 - A02-0004

#78 tischi opened 4 years ago
2
Cell Segmentation in H01 - plate5rep3_20200507_113530_429 - H01-0007

#77 tischi opened 4 years ago
3
feature computation took longer...

#76 tischi opened 4 years ago
3
Border line infected cells - 20200417_132123_311 - G03-0006

#75 tischi opened 4 years ago
1
Missing infected cells - 20200417_132123_311 - G03-0004

#74 tischi opened 4 years ago
0
Missed infected cells - 20200417_132123_311 - A01-0004

#73 tischi opened 4 years ago
0
Control cells are larger than infected cells

#72 tischi opened 4 years ago
1
Checklist for new results

#71 constantinpape opened 4 years ago
4
Image out of focus - PlateK21rep1_20200506_132517_049 - A01-0000

#70 wolny opened 4 years ago
1
Missed infected cell - PlateK19rep1_20200506_095722_264 - A01-0004

#69 tischi opened 4 years ago
8
Infected cell detection failed - PlateK19rep1_20200506_095722_264 - A01-0004

#68 tischi opened 4 years ago
0
Infected cell detection failed - 20200417_203228_156 - A02-0004

#67 tischi opened 4 years ago
0
Infected cell detection failed - plateK12rep1_20200430_155932_313 - C02-0004

#66 tischi opened 4 years ago
11
Some of "K" plates the Z scores are really low

#65 tischi opened 4 years ago
4
Plates from new experiments, listed as having issues by Vibor

#64 constantinpape opened 4 years ago
14
Too many cells but few in table - plate9_2rep1_20200506_163349_413 - A01-0004

#63 tischi opened 4 years ago
1
Flatfield correction IgA - plateK17rep1_20200505_115526_825 - H01-0005

#62 tischi opened 4 years ago
0
Background for to be published plates - 20200417_132123_311 - B12-0008

#61 tischi opened 4 years ago
0
Using well H01 for background - plateK12rep1_20200430_155932_313 - H01-0004

#60 tischi opened 4 years ago
2
Strange serum signal - plateK12rep1_20200430_155932_313 - H01-0004

#59 tischi opened 4 years ago
3
Report version test - 20200417_132123_311 - A01-0001

#58 tischi opened 4 years ago
0
Test report version - 20200417_132123_311 - A01-0004

#57 tischi closed 4 years ago
0
Also include batchlib version in the issue description

#56 constantinpape closed 4 years ago
2
Missed outlier - 20200417_132123_311 - F06-0002

#55 tischi opened 4 years ago
0
Well with outliers - 20200417_132123_311 - D06-0004

#54 tischi opened 4 years ago
0
Missed outlier - 20200417_132123_311 - D06-0003

#53 tischi opened 4 years ago
0
Dim serum signal - 20200417_132123_311 - B12-0004

#52 tischi opened 4 years ago
6
Ratio dependency on cell density

#51 tischi opened 4 years ago
1
Partly out of focus - 20200417_152052_943 - A02-0005

#50 tischi opened 4 years ago
1
Make public?

#49 constantinpape opened 4 years ago
0
weakly infected cell - 20200405_test_images - C08-0005

#48 tischi opened 4 years ago
2
Cross contamination IgA/marker?

#47 lorenzocerrone opened 4 years ago
8
Background correction - titration_plate_20200403_154849 - B01-0002

#46 tischi opened 4 years ago
5
Giant cells - titration_plate_20200403_154849 - G04-0002

#45 tischi opened 4 years ago
4
Giant cells - titration_plate_20200403_154849 - G04-0008

#44 tischi opened 4 years ago
2
Giant cell - titration_plate_20200403_154849 - G04-0007

#43 tischi opened 4 years ago
0
Large debris as cells - titration_plate_20200403_154849 - G04-0004

#42 tischi opened 4 years ago
0
Cell debris - titration_plate_20200403_154849 - E03-0008

#41 tischi opened 4 years ago
0