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Does _run_pycistarget_ only ueed for homo_sapiens, mus_musculus, drosophila_melanogaster and gallus_gallus? I notice this Parameters--species only contain this four species?
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In the Ontology Quality Assessment, I found that there was an unknown prefix `oma` (see https://cthoyt.com/oquat/unknowns/prefix/oma). This apparently only appears in definition xrefs in PRO entries t…
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- [ ] Identify pages used on Tripal and define subset to implement
- [ ] Discuss administrator editing of page content online
- [ ] Identify popular plugins and re-implement
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Consider the following pattern:
(subject:gene)(object:disease)
Where relation is one of:
1. pathogenic
2. likely pathogenic
3. has phenotype
4. marker/mechanism
5. contributes to
...
In…
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**A suggested workflow**:
A common request is be able to run OrthoFinder using IQTREE. This can create problems for most users because IQTREE can use a lot of RAM and so running multiple instances in…
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Dear SUPPA team,
I'm very interested in U12 splicing events, I wonder if you will include U12 analysis in SUPPA?
By the way, based on your expertise, which algorithm can be used to analyze U12 s…
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Problem at the step 4.
orthomclSoftware-v2.0.9/bin$ ./orthomclInstallSchema ../my_orthomcl_dir/orthomcl.config
DBI connect('orthomcl:mysql_local_infile=1:localhost:3307;mysql_read_default_file=…
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Currently, deepnog ships one model per eggnog level and network architecture.
If we ever decide to retrain certain models, users need to individually come up with strategies to tell models apart, or …
VarIr updated
3 years ago
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hi guys - i didnt want to start tons of tickets for these, so im putting them together here - let me know if youd like me to do this differently:
1]
in link: "https://nemoanalytics.org/projectio…
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Presenter: Maureen Stolzer
Link: http://www.cs.cmu.edu/~durand/Notung/
Brief description: Notung is a gene tree-species tree reconciliation software package that supports duplication-loss (DL) a…