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Would like to retain hierarchies within OBOs when present (i.e., going beyond base versions, or using "maximal" versions when available) but want to avoid axiom conflicts.
### Describe the desired …
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We will develop consensus guidelines for when a new disease should be defined. This will require review of mentions in the literature or other sources; determining whether molecular mechanisms would d…
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Originally reported on Google Code with ID 129
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there is a great need for a diversity of MRI assays of brain regions - essentially a
change according to the following axes and for mid-level struct…
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Embedding UBERON in species specific phenotype ontologies is exceedingly hard because even small signatures lead to enormous bottom modules. For example, the import of UBERON for hp (33 MB) is larger …
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Some ontologies become inactive or deprecated because they have merged into
another. How should we redirect users in such cases? For example, TAO and AAO
are being merged into uberon, CL-DC has …
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Hi,
Loaded vertebrate.owl. Run Elk. Search for "Short upper lip". Click on the
anatomical class used in logical definition ('upper lip'). See attached
screenshot.
- The definition this hp-clas…
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Our web-based, prototype Phenotype Reconciliation Workbench [72] uses string matching and semantic criteria to identify ontology terms for potential alignment. We will refine this tool to improve usab…
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Create an R package for computing pairwise and profile semantic similarity metrics similar to the Rphenoscape package, but instead of using the Phenoscape KB API to obtain subsumers of input terms, us…
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**Module Overview**
This module focuses on polarity. Polarity refers to symptoms/phenotypes/adverse events that might be considered to be opposites (e.g., high vs low, absent vs present, normal vs ab…
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I recently downloaded Phenex to start annotating beetle matrices with ontology terms.
When trying to use it, it starts loading until I get this message:
"An error occurred while loading ontologies:…