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There are a number of existing slots/mixins/classes relating to - broadly speaking - phenotypic frequency. Recent discussions suggest room for improvement in their definition, structure and relationsh…
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Hey teams! Can you please review my "how to upload raw phenotypic data" tutorial when you have a chance? Thank you in advance :)
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**WORKFLOW INPUT:**
See ICEES_FeatureVariables and ICEES_Identifiers [here](https://github.com/NCATS-Tangerine/icees-api/tree/master/docs) for diagnoses. Note that these docs are updated as new var…
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Tweets:
@egonwillighagen @cdsouthan @xanderpico @Chris_Evelo Hi gents - most OSM targets not known. Phenotypic discovery. Series 4 likely PfATP4 1/2
https://twitter.com/MatToddChem/status/61041511037…
egonw updated
9 years ago
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I try using the find.clusters function with the phenotypic data of wheat (you can think of my data set similar to USArrets dataset) for the purpose of cutting the dendrogram into these number of clust…
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What similarity function to implement for comparing sets of HPO terms in the gsppc (gene set phenotypic profile comparison) R notebook? The first version used Jaccard similarity. Could re-implement on…
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As a general (and easy) suggestion, it would be great to start collating a repository of standard phenotypic measure .json files for the commonly used Clinical/behavioural questionnaire/scales (alth…
tsalo updated
7 months ago
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**High-level Question**
Find phenotypic profiles (characteristics) associated with environmental exposures within a [cohort]
**Specific Instance**
Find phenotypic profiles associated with environ…
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- [x] Download all project files from fcp-indi bucket on S3
- [x] Create mapping approach
- [x] Create docs/process for how to contribute
- [x] Merge phenotypic data into a single csv
- [ ] Creat…
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Hi,
I was hoping I could ask for a bit of more detail on how Regenie processes quantitative phenotypes. I am currently considering if I should do the process myself, or use Regenie's implementation…