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thibautjombart
/
adegenet
adegenet: a R package for the multivariate analysis of genetic markers
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Error in DAPC while selecting DAs
#361
massub
closed
2 months ago
1
Strata problem
#360
laiajulianamu
opened
2 months ago
7
Geographic Distance (IBD)
#359
isapetitta
closed
2 months ago
2
Error in fstat(b, fstonly = T) : could not find function "fstat"
#358
nicolashazzi23
opened
6 months ago
3
SNP weight values
#357
Tannervanorden
opened
7 months ago
0
How to migrate genind objects to newer version of adegenet?
#356
romunov
closed
6 months ago
1
Inconsistant results with adegenet::spca and adespatial::multispati
#355
arthurdegrandpre
opened
9 months ago
0
accessor nAll doesn't work on genindSummary
#354
romunov
opened
1 year ago
0
linkage mappers
#353
zinstan
opened
1 year ago
0
scatter error
#352
cfz1998
closed
1 year ago
3
genet.dist not working for populations with large difference in sample size
#351
georgeomics
closed
1 year ago
3
permutations running gene.dist
#350
Humminglipe
opened
1 year ago
0
Screeplot() function for sPCA is extremely slow.
#349
cms2775
opened
1 year ago
0
NA.char other than "-9" lead to potential problems with Microsat data
#348
grolshausen
opened
1 year ago
0
Majority of variance explained by LA1
#347
Repti34
opened
1 year ago
0
fix cran again
#346
zkamvar
closed
1 year ago
0
fix short bool
#345
zkamvar
closed
1 year ago
0
attempt to update C functions
#344
zkamvar
closed
1 year ago
1
Compoplot of DPAC assigning individuals complete membership of clusters issue
#343
mattbareno
closed
1 year ago
4
adegenate
#342
zinstan
closed
1 year ago
1
failing CRAN check in C23 mode
#341
zkamvar
closed
1 year ago
2
vcfR2genlight does not calculate loc.all field
#340
frederikvand
closed
1 year ago
1
Parallel option for find.clusters and dapc?
#339
ac-harris
opened
1 year ago
1
fix CRAN warnings
#338
zkamvar
closed
1 year ago
1
CRAN Errors 2022-09
#337
zkamvar
closed
1 year ago
0
DNAbin2genind and ambiguity codes from Fasta
#336
burbrink
opened
1 year ago
1
Not reproducible results with find.clusters
#335
Deepak12Kaushik
opened
1 year ago
0
Expected heterozygosity
#334
ettorefedele
opened
2 years ago
0
CRAN release 2022 06
#333
zkamvar
closed
2 years ago
0
RIPLEY: remove tripack and akima from Suggests
#332
zkamvar
closed
2 years ago
0
as.matrix.genind: NA.method="mean" doesn't work
#331
ltalignani
closed
2 years ago
3
xval error object 'out' not found
#330
nlv209
closed
2 years ago
1
summmary.spca bug fix for matrices and data frames
#329
lvclark
closed
2 years ago
2
`summary.spca` not working when `spca` run on matrices
#328
lvclark
closed
2 years ago
2
PCA result of glPca is quite different from plink
#327
cpwater
opened
2 years ago
1
Does read.genepop really needs `ncode`?
#326
courtiol
opened
2 years ago
0
Strata for running AMOVA
#325
laiajulianamu
closed
2 years ago
1
PCoA plot problems
#324
laiajulianamu
closed
2 years ago
1
add sanity check to n.pca.max to default to max value if vector
#323
pdimens
closed
2 years ago
2
cross validation is slow
#322
pdimens
opened
2 years ago
3
Connection network not displaying connections when plotting results of sPCA
#321
z-j-r
opened
2 years ago
0
genind2df() doesn't work for 'rupica' when 'oneColPerAll = TRUE'
#320
dfriend21
opened
2 years ago
1
the obtained graph doesn't represent individuals as dots in DAPC
#319
kopelol
closed
2 years ago
5
CRAN release 2021-10
#318
zkamvar
closed
2 years ago
1
fix bug in hybridize via tab method for genpop
#317
zkamvar
closed
2 years ago
0
move spdep to suggests
#316
zkamvar
closed
2 years ago
0
Move spdep to suggests
#315
zkamvar
closed
2 years ago
0
Set all parallel = FALSE
#314
zkamvar
closed
2 years ago
1
Better handling of parallel computation (or lack of) for Windows users
#313
courtiol
closed
2 years ago
3
ERROR: number of cluster centres must lie between 1 and nrow(x)
#312
kopelol
closed
2 years ago
3
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