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initpipeline and runpipeline have a difference in the directory name used for the '-d' argument ("test_phmmmer" vs "test_phmmer"
```
../initPipeline -l flx -f -m carsonella_pe_filt.fna -d test_phmmme…
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There is currently no way to make make local charts for isolated systems, since the krona folder doesn't include the web resources. Is it feasible to drop in the complete KronaTools directory, rather…
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Hi,
I found a small issue in INSTALL.py when installing all workflows/packages:
$ python INSTALL.py core optional fastqc ca ale sga freebayes abyss lap frcbam quast metaphyler eautils ray numpy f…
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Hi,
When I try to parse the alignment file provided by the phmmer command, the org.biojava3.alignment.io.StockholmFileParser throws an exception "Error: Unknown or unexpected line". After looking at…
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Hi,
I've downloaded metAMOS from github and installed everything as I was having issues with programs not being found. However, I'm now getting a seg fault by "FilterEdgesByCluster"
In the PROPAGATE…
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Hi,
I started off by trying out the metAMOS test script:
$ cd Test
$ ./run_test.sh
However, the following error appeared in the log
. /metAMOS/Test/test1/Logs/SCAFFOLD.log
######
...
Clique ra…
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Need to add Annotate to task list, check for called programs in PATH/metAMOS PATH, if not there, exit.
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Hi,
I getting the following error probably in the classify step:
Starting Task = classify.CLASSIFY
**\* metAMOS running command: perl -I /home/bioinfo/programas/metAMOS-1.5rc1/AMOS/Linux-x86_64/lib …
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Hello, I am trying to run MetAMOS on our UC Davis servers, and I keep getting a persistent error as follows (error is repeatable regardless of which Illumnia dataset I try to process - seems like a br…