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Hello:
I would like to request a new GO term to describe the sexual reproductive phase of the Dictyostelium life cycle. This term is most commonly associated with D. discoideum, but applies to at l…
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### What steps will reproduce the problem?
1. start *BEAST analysis
2. add phylogeography trait
### What is the expected output? What do you see instead?
Expected to be able to specify location for t…
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Walker, R. S., & Ribeiro, L. A. (2011). Bayesian phylogeography of the Arawak expansion in lowland South America. Proceedings of the Royal Society B: Biological Sciences. http://doi.org/10.1098/rspb.2…
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Currie, T. E., Meade, A., Guillon, M., & Mace, R. (2013). Cultural phylogeography of the Bantu Languages of sub-Saharan Africa. Proceedings of the Royal Society B: Biological Sciences, 280(1762), 2013…
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- de Schryver, G. M., & Grollemund, R. (2015). Introducing a state-of-the-art phylogenetic classification of the Kikongo Language Cluster. Africana Linguistica, 21, 87?162.
- Lee, S., & Hasegawa, T. (…
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The phylogeography depends on `sphericalGeo.LocationParameter` and others from the `beast-geo` package, but the message for this `[DEPENDENCY]` is missing.
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## githubinstall("pegas") installs an old version of pegas from the repository of dwinter:
`githubinstall("pegas")`
Suggestion:
- dwinter/Pegas My branch of Emmanuel Paradis' PEGAS library for ph…
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If there is no _%HPD_modality attribute on the tree, then the SpreaD3 gui raises an error:
```
setSelectedIndex: 0 out of bounds
```
STDOUT shows the real error:
```
locationsgeo_%HPD_moda…
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The "_snp.txt" files contains information about original scientific publication for SNPs. However it might not be straightforward to find the correct publication. More information about those papers n…