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Greetings. I keep getting an error message 'Protein doesn't have the full sequence' when using spectral count. My PSM file data input (named 'score') is in the format of Crux tab delimited, but the da…
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There used to be a page about the Protein families game on the website, which is now missing.
Can you please add a new section 'Outreach' to the Help tab of the website that points to https://www.ebi…
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I love Orthofinder, it has been so helpful in our research in so many ways.
I am having one particular issue where I am getting non-informative sequence IDs in all the fastas in the Single_Copy_Ort…
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Hi,
How would one process DIA data in DIA-NN from a digested lysate spiked with Heavy Lys and Arg 13C and 15N labeled protein standards?
Thanks,
Stoyan
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**- Describe the feature:**
Dear Sir
I just wonder if i did dimethyl labeling ( Light and Medium)
I set up in Quant (MS1) as below
Light = Kn28.013
Medium = Kn32.056
it work very wells
I…
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I have a search that was done with MBR on and standard MaxLFQ normalization, but when I run this code in R to recreate the report_pg.matrix, I end up with more protein group IDs than in the original a…
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- [x] warning about filtered trees not being same as a tree from filtered protein seqs
- [x] tree/table mismatch warning verbiage and link to contact page, make sure all cases are handled (tree is su…
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These are the ordered list of dataset creation steps:
1. Making protein datasets part-I (creation of protein datasets that do not depend on proteoform datasets)
2. Making glycan datasets
3. Makin…
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Hi,
thank you for sharing your script of doing protein docking.
I am currently working with protein-protein interaction, and am trying to use your codes on my alphafold3 predicted structure.
Ho…
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Dear Vadim
In the diann results, most of the Protein.ids are uniprot accession ids (from the fasta file I used), but some are accession ids combined by ";" . Some are combined with cRAP-***, I thin…