-
Dear all,
The proposal has been made to obsolete GO:0019933 cAMP-mediated signaling
Annotations are here:
https://docs.google.com/spreadsheets/d/1FbtqczOsSDcXydGOk6ydTj6Ux4y_BfaCG9v6ejy2HWQ/e…
-
Check whether and how we can use protein annotations provided by `ensembldb` in the `Pbase` package.
-
Hi, thanks for developing this nifty tool.
https://github.com/ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit/blob/fc1623da5df1309d2e2f0b9bb0363aaab84708f4/cat/hints_db.py#L309-L310
ou…
-
The following query works.
```
PREFIX core:
PREFIX rdf:
PREFIX rdfs:
PREFIX xsd:
PREFIX faldo:
select ?protein ?dr ?xref {
FILTER( = ?protein)
?protein core:annotation ?annot…
-
Hello,
I am trying to run the command that prepares the protein fasta as follows:
k8 pangene.js getaa gene-anno.gtf protein-seq.faa > proteins.faa
And I am getting an empty proteins.faa and the…
-
Hi Raja,
Please feel free to pass this information to your team.
I would like to let you know that RCSB PDB is currently implementing cross-reference of glycoproteins from [RCSB.org](http://rcsb…
-
I'm looking at annotations in the proteins and humangenes domain in the `google_patent_research.annotations` table. It appears that the annotations themselves are normalized to their preferred name, b…
-
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000413 protein peptidyl-prolyl isomerization
GO:0001932 regulation of protein phosphorylation
GO:0001933 negat…
-
From: https://github.com/geneontology/go-ontology/issues/21605
From @genegodbold
The annotations for certain GO terms have both parasite and host sequences attached to them, when it seems as if t…
-
Suggestions:
- [x] C. elegans
- [ ] E. coli
- [x] S. cerevisiae
- [ ] Plant species: http://zzdlab.com/plappisite/index.php