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- [ ] add SSDraw (https://github.com/ncbi/SSDraw)
- [ ] make retrieval of structure more robust and allow alphafold structures
- [ ] add preview image of the svg in the output
- [ ] add different …
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I tried running GeoDock with a VH-VL antibody complex + its protein antigen. GeoDock succesfully generated a docked structure, but it looks like the antigen is bound on the opposite side of the VH-VL …
wjs20 updated
9 months ago
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In this model
The phosphorylation status of rec8 is important (in this case ([Phos:(S450),UnPhos(S412)](https://purl.obolibrary.org/obo/PR_000050512))
In PRO this has a short label
PRO-Sho…
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I want to sketch a genome to get 7-mers of amino-acids (ie peptides), so I give the new CLI a spin:
```bash
sourmash sketch translate -p k=7,k=10,scaled=1000,dayhoff genome.fasta
```
However, …
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We may want to restrict the `feature_universe` to a subset of genes/features even before further abundance (or other) based filtering happens.
For instance, you may want to restrict a DGE or PCA to…
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Compare topologies of identifies ligand to match those that are the same in different positions. Each copy should have a different `molecule.name` but identical `residue.type`.
- `molecule.basename…
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Need:
- Use portal interface to explain preliminary results in the next grant proposal.
- Build table of summarized metadata and summary statistics from each dataset of a specific data type (e.g. R…
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### Figure 1 | The SysNDD Concept, Curation Approach, and Tools
**Description:** This figure should illustrate the overall concept of SysNDD, including its purpose, the curation process, and the tool…
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"Docking" used to be a Topic (EDAM 1.12) but was deprecated, and merged into the notion of [Molecular modeling](http://edamontology.org/topic_2275). Yet it's suggested as a topic in https://github.co…
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I have a simple interface in R-shiny that allows a user to select top 10 genes with mutations in his data list and plot a lollipop plot. But, every query input of the gene the lollipop functions run t…