griffithlab GenVisR issues

griffithlab / GenVisR

Genome data visualizations

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how do I use this with gistic output?

#399 complexgenome opened 3 months ago
0
GenVisR: Error in waterfall_hierarchyTRV(data_frame, fileType, variant_class_order) or in heatmap_grob[["grobs"]][[ind_legend]] : no such index at level 2

#398 tanbiswas opened 5 months ago
2
cnSpec problem

#397 lfaino opened 5 months ago
1
Waterfall function missing?

#396 eaferrante opened 6 months ago
1
Error in heatmap_grob[["grobs"]][[ind_legend]] : no such index at level 2

#395 glscaglione closed 8 months ago
7
When Will Lolliplot be functional and what should i do in the meanwhile?

#394 jon4thin opened 1 year ago
1
unable to install GenVisR

#393 suzysu215 closed 1 year ago
1
Fixed https://github.com/griffithlab/GenVisR/issues/386#issue-1286049415

#392 joegage closed 6 months ago
0
VEP version 108 support

#391 damisiak opened 2 years ago
0
install GenVisr

#390 kellyduarte closed 1 year ago
1
FField dependency is deprecated

#389 csmatyi closed 2 years ago
2
change the Y-axis scale in cnView plot

#388 knight-hzj opened 2 years ago
0
Error downloading and reading the library (No package called FField)

#387 Sudheshna30 closed 2 years ago
16
Error in geneViz_formatUTR when no UTRs

#386 adam-cornwell closed 6 months ago
1
Split waterfall result plot based on clinical parameter

#385 Pisto94 opened 2 years ago
0
waterfall plot "plotMutBurden" function

#384 u1200538 opened 2 years ago
1
Using cnFreq with .seg files

#383 dannyjomaa closed 2 years ago
2
waterfall-when using sampOrder, some samples were not detected

#382 jingjiai opened 2 years ago
0
package failing in bioc 3.14

#381 vjcitn opened 2 years ago
0
Warning: Error in lolliplot_qual: Detected more than 1 transcript in input to x

#380 karenlawwc closed 2 years ago
0
Ordering Mutational Data by mutburden from high to low within each clinical data (subplot) cohort

#379 shmashitup opened 2 years ago
5
Error creating Waterfall plot

#378 sadieni opened 2 years ago
0
cnSpec/CNFreq

#377 RabeaW opened 3 years ago
0
including not mutated samples

#376 minkarimi closed 3 years ago
1
resolved #293

#375 zlskidmore opened 3 years ago
0
Cumulative CNV plot

#374 shwetagodbole opened 3 years ago
0
cnFreq() error

#373 SereFe opened 3 years ago
0
network？

#372 windforclouds closed 4 years ago
3
Fix documentation/message typos.

#371 cbrueffer closed 4 years ago
2
Error "CompressedIntegerList" - cnFreq

#370 guidmt opened 4 years ago
4
Deprecated data.table functions

#369 rdmorin opened 4 years ago
5
Removal of Legend from TMB plot via theme causes plot to fail

#368 RiversPharmD opened 5 years ago
2
Output mutation frequency by gene from waterfall plot

#367 Sheneice closed 5 years ago
0
clinLayer mainLayer are not pass to the plot in waterfall

#366 pcw271 opened 5 years ago
0
Pull list of waterfall plotting order

#365 pcw271 closed 5 years ago
1
How to add results based on q-values for waterfall()

#364 xiw588 closed 5 years ago
1
waterfall() remove sample names

#363 xiw588 closed 5 years ago
0
waterfall() gives the error

#362 xiw588 closed 5 years ago
2
Installation issue in AWS jupyter notebook instance

#361 sharmi298 closed 5 years ago
6
cnFreq did not detect identical genomic segments for all patients

#360 hannaeng opened 5 years ago
4
For help

#359 cshen226 closed 2 years ago
1
genCov does not work with masked BSgenome object

#358 zlskidmore opened 5 years ago
0
Installing mgcv dependency erroring on -fopenmp

#357 Matthew-Mosior closed 5 years ago
1
higlight the centromere

#356 Dagsbio opened 5 years ago
2
Regarding plottting lollipop plot using GenVisR

#355 shivangigithub opened 5 years ago
0
Darkening grid lines on waterfall plot

#354 johnzhe opened 5 years ago
2
cnFreq y axis scale

#353 cgrisdale closed 5 years ago
1
cnFreq does not reflect total number of samples

#352 gaiusjaugustus opened 5 years ago
2
waterfall plot and tvti graph for same samples : coordinated order of samples ?

#351 cedricvanm opened 5 years ago
5
Could it be possible to add copy-neutral LOH to the plot made using cnSpec?

#350 hoonghim closed 5 years ago
3