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When using the OBI lookup service for terms relevant to targeted/untargeted metabolomics and proteomics assays used in MoTrPAC data, I wasn't able to find the terms for the following:
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Targeted 3…
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@Mindyporterfield beyond the work of the students the outreach coordinator will also create some material. the list of ideas collected for the student projects can be a start.
> use-cases that can …
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Hello,
Thank you for your great work!
I have been using the software to analyze the DIA data. But I'm confused about the identifiactions of the two different wersions (DIA-NN(1.7.12) vs DIA-NN(1…
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MBR attempts to map identifications from one run onto peaks in another run. This is incompatible with the multiprotease search because it does not make sense to map IDs from one protease onto another …
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If a peptide can be mapped to multiple proteins, the 1.0 specs recommend duplicating the rows, and just changing the accession. I have a strong preference to change this so that multiple accessions ca…
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The current "dev" version of the workflow fails for me on the self-test data. The log output is included below (as part of "pipeline_report.txt") , but the cause of the problem isn't apparent from it.…
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Hi Vadim,
Attached is a figure demonstrating precursor identification performance for four tims SCP files run through diann 1.8.1 and diann 1.8.2 beta 11 under different conditions. Unless otherwi…
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Label-free quantification
Label-free quantification is a method that aims to determine the relative amount of proteins in two or more biological samples. It may be based on precursor signal intensity…
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### Description of feature
My plan is to use OpenMS' QCCalculator additionally in (almost) each step to create small mzQC files with additional summaries.
Those mzQC files should contain only stuf…
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Hi there,
I've encountered an issue after I applied fit4 = spectraCounteBayes(fit3)
It reports this error: Error in model.frame.default(formula = logVAR ~ x) :
variable lengths differ (found…