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Hi everyone!
I’m using the arrow command **arrow annotations load_gff3** to load a full GFF3 into an annotation track, but nothing's happening.
**The version of my plugin:**
apollo 4.2.13
**…
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i have a protein structure with some loops missing amino acids. Is there a way to use colabfold to model these loops?
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Hi Alex
Is there a reason why the model was not fitted with npx_normalised data?
many thanks
prasad
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Hello,
I was wondering if I can use AutoDock-Vina for docking between proteins and peptides.If not, do you have other suggestions?
Best Regards
Soodabeh
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Hi there!
How do I do inpainting on a multichain protein? For e.g. I want to make sure that all 3 chains in a trimer get the same changes. In proteinMPNN there is an option of `tied_positions` but …
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There're cases where multiple same protein concatenated in one PDB structure.
Ex. 1PKX
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How do I backmap from a density to the protein structure? e.g. I have enrichment for cholesterol in the lower right of the protein, but where does that density correspond to in the structure? Comparin…
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https://arxiv.org/abs/2009.01411
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Hello Ziqi, we have some issues about the data processing for new datasets.
1) We used ID in ensp_uniprot.txt to download native protein structures, but we discovered that over 600 native protein st…
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**Command that I ran:**
```
asap-ml build-dataset schnet --exp-file unknown_error.json \
--structures '*_complex.pdb' \
--ds-cache ~/dataset_cache_local.pkl \
--xtal-regex '(?