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The PANOLY main workflow documentation says I can run analysis with just pome data, no rna/cna required. However, the entrypoint to register data into table (PANOPLY-startup-notebook) seems to expect …
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Hi,
I am executing the portal_client tool (with my iHMP username and password) to download the files using a manifest file as follows:
portal_client -m hmp_cart_e0473170e2.tsv --endpoint-priority FA…
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Hello CompOmics team,
I am working on different proteomics datasets including both label-free and TMT experiments and I have several questions. After performing identification using SearchGUI with …
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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Hi Bo!
Thanks for fixing the Dockerfile -- that worked great! However, when I run the sample command, I am encountering an error after the preprocessing step.
If I understand this correctly, th…
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If you want to let people know you are working on a section please post here!
**Currently I have commitments for**
MS instrument types: Yuming Jiang and Jie Sun
Liquid separations: Simion Kreimer…
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Currently it's not possible to install Pathomx on Linux. This is largely due to the fact that most Linux distributions ship PyQt5 for Python3 only. Switching to Python3 is planned however there are a …
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Given the new `OnDiskMSnExp` infrastructure, it is time to upgrade the `quantify` method. I am considering the following signature (only focusing on the most important arguments for now):
```r
quant…
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Within the project PhenoMeNal we need to process RAW metabolomics data. These data come from different vendors that do not save the data of single measurements in a single file but in several files in…
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Hi, Thanks for providing such a fantastic tool.
We are going to add DIANN's information to OLS @ypriverol, please confirm whether the following information is correct:
- Name of the main score at th…