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If a tasks is creating qsub jobs for every sample in an analysis, and one sample causes an exception to be raised, the remaining qsub jobs might not be killed if they are not in the background jobs li…
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@kpfrang - is this branch still relevant?
https://github.com/VERITAS-Observatory/V2DL3/tree/pbh_trans_finder
Note that both v2dl3_qsub.py and qsub_convert.sh has been removed from V2DL3, as this…
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TODO:
* qsub_mode array==1 with parallel_flag == 1
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use qsub in dsAnalyze directly for massive postHoc analysis.
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Hello,
I am trying to run YAMP on a cluster of type SGE. It put these information in "process" part of the nextflow.config file :
executor = 'sge'
queue = 'batch,batchbm'
I get the followin…
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プリインストール版
/home/issp/materiapps/tool/Komega/Komega-2.0.0-0/
でのテストをしてみましたので、報告します。
結論から言うと、エラーなく動いたようです。
が、自分で「git clone→configure」したものとは、
ディレクトリ構成が違いました（プリインストール版は古い？）
特にsample fileが見当たりません。
…
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Hi Folks
Apologies if this has been discussed before.
Our national CHPC PBSPro cluster needs #PBS -P project_id for jobs to be submitted.
The -r passthrough for bcbio_nextgen.py does not work…
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Far from an original thought, but no one has made an issue yet :)
For current model shared output, we are making some of these accessible to users through the ACCESS-NRI Intake Catalog. This is a c…
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these aspects need to have INFO level log messages
- [ ] list the name of each task as it is being started
- [x] make sure that qsub log files containing error messages are printed to log; they migh…
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From what I can gather, jip submits jobs to SGE by calling qsub with its arguments and then passing "exec jip exec --db " on stdin. This does not work, at least on the version of SGE installed on our…