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- [ ] Should pass ROBOT QC checks @dougli1sqrd
- [ ] In particular, rdfs:labels should be uniquified in the same manner used for the rest of NEO. Are robot templates overkill here?
- [x] deci…
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As far as I'm aware we still do not have consensus on what the official CURIE prefixes are. @cmungall says "use BioLink", but there seem to be TWO different documents in BioLink with CURIES defined in…
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- [x] When minerva loads a GO-CAM RDF model, dynamically retrieve and add in upper-level type information for all the gene products in the model such that these are accessible to the Arachne reasoner …
goodb updated
4 years ago
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Thanks so much for being willing to help with this @jwyrwa!
I am hoping that you would be willing to proof each of the following Wiki pages listed below to verify I have removed all spelling/gramma…
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Looking at the [supplemental tables](https://github.com/OpenBioLink/OpenBioLink/blob/66975836859b6a3b6dc061e2003db53829d438e2/paper/supplementary%20data.pdf), I see the study has incorporated data fro…
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At GOC 2019b in Berkeley, we briefly discussed providing these kinds of reactions with either more specific types, e.g. something along the lines of 'protein complex disassembly' for dissociation and,…
goodb updated
4 years ago
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I think we should change the release process of go-plus.owl to merge import modules, so that the downloaded file is completely standalone. Currently, while a given ontology release has a version IRI, …
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Right now, the minerva triplestore seems to load only the gocam models but no ontologies.
This means that any SPARQL query requesting meta data on a GO term or a gene product will failed. Some ART …
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Bug testing (everyone):
Run through the basic user workflow yourself and keep an eye out for software bugs. Note them on Github.
User testing (Toronto in the new year):
- End-to-end walkthr…
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REACTOME xrefs appear to be way overspecified to me, as if every child term is being xreffed to a term like GO:0004713 ! protein tyrosine kinase activity, along with multiple species-specific annotati…