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Hi @tjiangHIT ,
I am sorry, I encountered another problem. The attached bam file example has a clear heterozygous 97 base insertion at `1:1501010`.
 or a read structure (similar to what exists in FastqToBam) in TrimFastq.
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Hello,
I want to try `imrep` with my RNA-seq data. I've aligned the `fastq` to genome with `STAR`, and saved the unmapped reads in `fastq` format (using `--outReadsUnmapped Fastx`). As you said, `S…
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Hi,
We have mapped our illumina short reads to our genome using typical commands with --SAM of chromap.
 with the following command but I get the following error
funannotate train -i $genome --cpus 1 -o $outdir -l $left -r $right --trinity $t…
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Checked on both samtools 1.9 on macOS and samtools 1.5 on Redhat Linux
Steps:
Decompress and index the attached bam file with `samtools index AV-WXa1591_m_scaffold1.bam`
then
`samtools mpileup …