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Here is a personalized video review
https://uw.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3692c33-b29b-44d9-ac2b-ac1540b518f1
1) The next step is to turn the blast out put into a genome featur…
sr320 updated
7 years ago
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Hi,
I found that there are always too many LTRs no matter what sequences I provided.
For example,
1) helitronscanner(https://sourceforge.net/projects/helitronscanner/) results as input,
![imag…
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Hi @abretaud, @nathanweeks, @johanneskoester, @kastman, @pvanheus, @jerowe, @bgruening and @ArneKr,
I ran Maker but I got the following error:
```
> qpeek 4702790.pbs
Possible precedence issu…
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Hi. I am running RepeatModeler-2.0.1 on a 500Mb de novo assembly of an insect. It outputs a consensi.fa and I ran the RepeatClassifier script to classify the repeats.
`RepeatClassifier -consensi c…
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Is there a quick way to check all the pre-requisites were installed correctly and tlex3 will run properly?
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Hello,
I want to use TElocal and I can not find the locInd file for mm9. Now, I downloaded a file named **mm9_rmsk_TElocus.ind.gz** from https://www.dropbox.com/scl/fo/o0my0l1c7s40un9qv6yvf/AC8F4x…
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Hi,
I've been trying to softmask a 40Mb algal genome (53 contigs) for a subsequent annotation.
First, I tried using funannotate mask (a wrapper for Repeatmodeler and RepeatMasker), it run 300h w…
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Hi,
I recently started liftover my gff with flo.
Since I concern if repeats in the genome affect the liftover result, I would like to try running flo with target genome with and without RepeatMask.
F…
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Hi, Bogdan and Michael @kirilenkobm @MichaelHiller,
This was originally a comment on issue #9. Then, I realize it's a separate issue.
When I tried human vs. Chimpanzee and human vs. _Macaca mul…
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Hi,
I am trying to open my repeatmasker output file using read_rm as in the tutorial but I keep getting this error:
Error in `str_trim()`:
! `side` must be one of "both", "left", or "right", not …