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Dear developers,
I have just downloaded `SpatialOmicsOverlay ` and I am hoping to plot some gene expression data from a GeoMx object to an OME-TIFF file that I downloaded from the GeoMx DSP Control C…
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Hi,
Is there a way to include variants in RNA genes without getting all non-coding variants in regular protein-coding genes (or intronic variants in protein-coding genes that are also ncRNA variant…
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Hello,
@mpoelchau and myself have been discussing the behavior of storing GFF files for feature annotations via Tripal. We are considering a gene that perhaps has been annotated with GO terms, KEG…
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Hi!
I was wondering if there is a way to download a table that contains the accession number or name of the gene and the mechanism of resistance. When I download the aro.tsv from the CARD site (ht…
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I was taking a look at database matches among the three species and noticed something odd. All three species have miRNAs with database matches to publications of mir-2030, but that was *not* one of th…
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see GO ticket go-ontology/issues/23135
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## Background
`GenBank` format ("GenBank Flat File Format") is a genomic format that describes nucleotide sequences and their protein translations. `GenBank` file (`.genbank`, `.gb`, `.gbk`) is a s…
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from version v0.0.18 we start to infer the genome size for peak calling from the provided genome file, before we set this using instead of using macs available defaults.
This changes the background …
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TL;DR - there are uniprot KW and EC annotations to this family that contradict the literature.
I'll take yeast RAD26 as an exemplar here, but similar patterns are seen in orthologs.
Uniprot has …
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
What are the collection types and names? Example:
- Arachis/stenosperma/annotations/V10309.gnm1…