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Nanostring-Biostats
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SpatialOmicsOverlay
Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
MIT License
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Error for readSpatialOverlay() - Error in .jcall
#59
ybaeus
opened
1 month ago
1
labworksheet and IPA
#58
maddygriz
closed
4 months ago
2
LabWorksheet not imported correctly when all mask IDs are number-like strings.
#57
mgrout81
opened
10 months ago
0
v1.2 release
#56
maddygriz
closed
10 months ago
0
Special character rois
#55
maddygriz
closed
10 months ago
0
Allow string names for ROIs
#54
natmurad
closed
10 months ago
9
add sf
#53
maddygriz
closed
10 months ago
1
reduce test data size
#52
maddygriz
closed
10 months ago
6
fluorLegend not working when fluor targets aren't unique
#51
mgrout81
opened
11 months ago
0
v1.1 bug fixes
#50
maddygriz
closed
11 months ago
8
Adjusting intensity values crops image erroneously
#49
mgrout81
closed
11 months ago
1
addPlottingFactor with NanoStringGeoMxSet version
#48
mgrout81
closed
11 months ago
2
Error in if (nchar(x) > bookend * 2) { : the condition has length > 1
#47
EsperanzaDai
closed
11 months ago
3
Errors for unexpected annot file inputs
#46
maddygriz
opened
1 year ago
0
Error: nrow(AOIattrs) < nrow(annots)
#45
MrModenait
opened
1 year ago
1
macOS updates
#44
maddygriz
closed
1 year ago
0
Bioc review
#43
maddygriz
closed
1 year ago
0
reduce check time and quick bioc issues
#42
maddygriz
closed
1 year ago
0
Remove examples
#41
maddygriz
closed
1 year ago
0
Revert "remove running of examples to decrease check time"
#40
maddygriz
closed
1 year ago
1
remove running of examples to decrease check time
#39
maddygriz
closed
1 year ago
0
Export OME-TIFF file format
#38
maddygriz
opened
1 year ago
0
Update tests
#37
maddygriz
closed
1 year ago
0
Set scale bar microns
#36
maddygriz
closed
1 year ago
0
SpatialFeatureExperiment integration
#35
maddygriz
opened
1 year ago
0
labworksheet read in
#34
maddygriz
opened
2 years ago
0
Solve minor issues
#33
lardenoije
closed
2 years ago
5
Update custom fluor name
#32
maddygriz
opened
2 years ago
0
Allow image to have 1-3 channels
#31
maddygriz
opened
2 years ago
0
readSpatialOverlay-Error in .jcal
#30
MusculusMus
opened
2 years ago
1
set scale bar width
#29
maddygriz
opened
2 years ago
0
Updated tests and reqs&specs
#28
maddygriz
closed
2 years ago
0
rotate image by degrees
#27
maddygriz
opened
2 years ago
0
download instructions
#26
maddygriz
closed
2 years ago
1
image analysis
#25
maddygriz
opened
2 years ago
0
add graphing features on top of the image
#24
maddygriz
opened
2 years ago
0
CosMx integration
#23
maddygriz
opened
2 years ago
0
RBioFormats package integration
#22
maddygriz
opened
2 years ago
0
github release
#21
maddygriz
closed
2 years ago
1
author and license
#20
maddygriz
closed
2 years ago
0
doc warning
#19
maddygriz
closed
2 years ago
0
decrease check time, again
#18
maddygriz
closed
2 years ago
0
decrease check time
#17
maddygriz
closed
2 years ago
0
decrease check time
#16
maddygriz
closed
2 years ago
0
Shorten vignette build time
#15
maddygriz
closed
2 years ago
0
Updated spec links
#14
maddygriz
closed
2 years ago
0
reduce image size
#13
maddygriz
closed
2 years ago
0
remove data
#12
maddygriz
closed
2 years ago
1
fix \ issue
#11
maddygriz
closed
2 years ago
2
small test edit
#10
maddygriz
closed
2 years ago
0
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