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Hi, I have encountered an issue when running my BAM file the error mentioned 'Segmentation fault' after reading the BAM files.
This is my config files:
[config.txt.txt](https://github.com/user-a…
Calhs updated
2 months ago
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Hi,
I'm running BatMeth2 doing:
`BatMeth2 align -1 R1.fastq.gz -2 R2.fastq.gz -g reference.fa -of BAM -o pwet -p 30`
and I have the following issue:
`[E::sam_parse1] numeric value out of allowed…
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This is long overdue. It's memory usage is excessive on long read technologies, plus the output simply isn't that useful either.
It was first written in an era of small (eg 75bp) fixed size alignm…
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Hello, thanks for the plugin!
I am having some issues with it, though. It is apparently deleting intermediate files marked for use in upcoming processes. When running my pipeline (which I created m…
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Unused in pipeline
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My circlator (Circlator version: 1.5.5) run with the following command was running for 3 days and then stopped and never continued. Here is the last part of the log file:
Command:
```
circlator a…
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Hello!
I am working with low-coverage (~4x) Whole Genome Resequencing data (sequenced on a NovaSeq) for 24 individuals.
After using bamUtils' clipOverlap tool, the output of ValidataSamFile look…
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Hi
using the "gem install" command I get the following error:
> Fetching bio-polyploid-tools-1.2.1.gem
Fetching systemu-2.6.5.gem
Fetching descriptive_statistics-2.5.1.gem
Fetching bi…
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Hi,
When I was configuring LACHESIS, an ERROR about samtools always came up. The samtools have already been installed and I gave it the DIR. However, it could not recognize the samtools.
The comman…